Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VCASEI_RS02535 Genome accession   NZ_AP018680
Coordinates   522780..523307 (+) Length   175 a.a.
NCBI ID   WP_086960845.1    Uniprot ID   -
Organism   Vibrio casei strain DSM 22364     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 517780..528307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCASEI_RS02525 galU 520806..521657 (-) 852 WP_086960752.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VCASEI_RS02530 - 521807..522457 (-) 651 WP_162621008.1 LuxR C-terminal-related transcriptional regulator -
  VCASEI_RS02535 ssb 522780..523307 (+) 528 WP_086960845.1 single-stranded DNA-binding protein Machinery gene
  VCASEI_RS02540 csrD 523475..525466 (+) 1992 WP_089110584.1 RNase E specificity factor CsrD -
  VCASEI_RS02545 - 525484..526938 (+) 1455 WP_089110583.1 MSHA biogenesis protein MshI -
  VCASEI_RS02550 pilO 526938..527615 (+) 678 WP_089110582.1 type 4a pilus biogenesis protein PilO -
  VCASEI_RS02555 - 527608..527931 (+) 324 WP_089110581.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19155.13 Da        Isoelectric Point: 5.2258

>NTDB_id=70312 VCASEI_RS02535 WP_086960845.1 522780..523307(+) (ssb) [Vibrio casei strain DSM 22364]
MASRGINKVILVGNLGNDPEIRYLPSGGAVANITIATSDSWRDKATGEQREKTEWHRVSLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRFTTEVVVQGFNGVMQMLGGRAQGGAQAPAGNQGGNWGQPQQPQASQQPASRAPQQQSPQQQAP
QYNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=70312 VCASEI_RS02535 WP_086960845.1 522780..523307(+) (ssb) [Vibrio casei strain DSM 22364]
ATGGCTAGCCGCGGAATAAACAAAGTAATATTAGTTGGAAATCTTGGTAACGATCCGGAAATTCGTTATTTACCTAGCGG
TGGTGCGGTGGCAAATATTACCATTGCAACGTCGGATTCTTGGAGAGATAAAGCCACTGGAGAACAACGTGAAAAAACAG
AATGGCACCGTGTGTCATTGTTTGGTAAGTTGGCCGAAGTAGCTGGTGAATATTTACGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAGCTGCAAACACGTAAATGGCAAGACCAAAGTGGCCAAGATCGTTTCACTACCGAAGTGGTTGTTCAAGGGTT
TAATGGCGTAATGCAAATGCTTGGTGGTCGTGCTCAAGGTGGCGCTCAAGCTCCTGCTGGCAATCAAGGTGGTAATTGGG
GGCAACCTCAACAACCCCAAGCTTCGCAACAACCAGCTTCTCGCGCTCCACAACAACAATCGCCTCAACAGCAAGCACCT
CAATACAATGAACCACCAATGGATTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.049

100

0.806
  ssb Glaesserella parasuis strain SC1401

53.061

100

0.594
  ssb Neisseria meningitidis MC58

43.889

100

0.451
  ssb Neisseria gonorrhoeae MS11

43.889

100

0.451

Multiple sequence alignment