Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NHL60_RS17285 Genome accession   NZ_CP099975
Coordinates   3649328..3649978 (-) Length   216 a.a.
NCBI ID   WP_253446319.1    Uniprot ID   -
Organism   Halomonas sp. Y3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3644328..3654978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHL60_RS17260 - 3645134..3645661 (+) 528 WP_253446309.1 DUF2878 domain-containing protein -
  NHL60_RS17265 fabA 3645782..3646297 (+) 516 WP_119022599.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  NHL60_RS17270 fabB 3646312..3647529 (+) 1218 WP_253446311.1 beta-ketoacyl-ACP synthase I -
  NHL60_RS17275 - 3647654..3648382 (-) 729 WP_253446313.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  NHL60_RS17280 - 3648379..3649272 (-) 894 WP_253446316.1 sugar nucleotide-binding protein -
  NHL60_RS17285 ssb 3649328..3649978 (-) 651 WP_253446319.1 single-stranded DNA-binding protein Machinery gene
  NHL60_RS17290 - 3650080..3651468 (-) 1389 WP_253446322.1 MFS transporter -
  NHL60_RS17295 uvrA 3651630..3654491 (+) 2862 WP_253446324.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23170.28 Da        Isoelectric Point: 5.2423

>NTDB_id=703093 NHL60_RS17285 WP_253446319.1 3649328..3649978(-) (ssb) [Halomonas sp. Y3]
MARGVNKVILIGNLGQDPEVRFMPSGAPVANLRLATTDTWMDKQSGQRQERTEWHNVVMFNKLAEIAQQYLKKGSKVYVE
GRLQTRKWQGQDGQDRYTTEIVVNDMQMLDSRGGGDFQGGGQAPQGGYQGGQYGGGAPQQGGGYGGQPQQSGGFGGQPQQ
GGGFGGQPQRPAQPQQRPAPAQPGGQQQQGQQGNQQGNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=703093 NHL60_RS17285 WP_253446319.1 3649328..3649978(-) (ssb) [Halomonas sp. Y3]
ATGGCCCGCGGCGTCAACAAGGTCATTCTTATCGGCAACCTGGGACAGGATCCCGAGGTTCGCTTCATGCCCTCCGGTGC
GCCGGTCGCCAACCTGCGGCTGGCGACCACCGACACCTGGATGGACAAGCAGTCCGGCCAGCGCCAGGAGCGCACCGAGT
GGCACAACGTGGTGATGTTCAACAAGCTGGCCGAGATCGCCCAGCAGTATCTCAAGAAGGGCAGCAAGGTCTACGTCGAG
GGGCGCCTGCAGACCCGCAAATGGCAGGGCCAGGACGGCCAGGACCGCTACACCACCGAGATCGTGGTCAACGACATGCA
GATGCTCGACTCTCGAGGCGGCGGTGATTTCCAGGGCGGTGGCCAGGCCCCGCAGGGGGGCTATCAGGGCGGTCAGTACG
GCGGCGGTGCGCCCCAGCAGGGCGGCGGCTATGGTGGCCAGCCTCAGCAGAGCGGCGGCTTCGGCGGTCAGCCTCAGCAG
GGCGGCGGCTTCGGCGGTCAGCCTCAGCGGCCGGCCCAGCCCCAGCAGCGCCCCGCGCCGGCCCAGCCGGGCGGCCAGCA
GCAGCAGGGCCAGCAGGGCAACCAGCAGGGTAACTACGGGGCGCCGGATCCTGGCAGCTTCGACGACTTCGATGACGAAA
TCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.772

100

0.505
  ssb Glaesserella parasuis strain SC1401

46.119

100

0.468
  ssb Neisseria gonorrhoeae MS11

43.662

98.611

0.431
  ssb Neisseria meningitidis MC58

43.192

98.611

0.426