Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NKE59_RS08880 Genome accession   NZ_CP099959
Coordinates   1755746..1756183 (-) Length   145 a.a.
NCBI ID   WP_353438629.1    Uniprot ID   -
Organism   Polynucleobacter sp. UK-FUSCHL-C3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1750746..1761183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKE59_RS08865 (NKE59_08835) ilvA 1752446..1753966 (+) 1521 WP_353438626.1 threonine ammonia-lyase, biosynthetic -
  NKE59_RS08870 (NKE59_08840) - 1753968..1754882 (+) 915 WP_353438627.1 5'-nucleotidase -
  NKE59_RS08875 (NKE59_08845) queF 1754894..1755733 (+) 840 WP_353438628.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  NKE59_RS08880 (NKE59_08850) ssb 1755746..1756183 (-) 438 WP_353438629.1 single-stranded DNA-binding protein Machinery gene
  NKE59_RS08885 (NKE59_08855) - 1756227..1757390 (-) 1164 WP_353438630.1 MFS transporter -
  NKE59_RS08890 (NKE59_08860) uvrA 1757428..1760343 (+) 2916 WP_353438631.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15836.72 Da        Isoelectric Point: 5.9288

>NTDB_id=702970 NKE59_RS08880 WP_353438629.1 1755746..1756183(-) (ssb) [Polynucleobacter sp. UK-FUSCHL-C3]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKENTEWHRIAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDQSGQEKYSTEIIADSMQMLGARMAGSGDAGDRPKSPESTPSQAPGGLGAMDDDIPF

Nucleotide


Download         Length: 438 bp        

>NTDB_id=702970 NKE59_RS08880 WP_353438629.1 1755746..1756183(-) (ssb) [Polynucleobacter sp. UK-FUSCHL-C3]
ATGGCTTCAGTCAATAAAGTCATCATAGTTGGTAATGTTGGGCGCGACCCAGAAACACGTTATATGCCCAGTGGTGACGC
CGTCACCAATATTTCTGTTGCAACCTCAGACCGTTACAAAGATAAGCAGACGGGTGAGATGAAAGAAAATACAGAATGGC
ATCGAATAGCCTTCTTTGGCAAGCTGGCTGAGATCGCTGGTCAATATCTCAAAAAGGGTTCTCAGGTTTATGTGGAGGGT
CGCTTGCGTACGCGTAAGTGGACTGATCAAAGCGGTCAAGAAAAATATTCAACCGAGATCATTGCTGACAGTATGCAAAT
GCTCGGAGCGCGTATGGCCGGTTCTGGGGATGCTGGTGATCGCCCCAAGTCTCCTGAAAGCACTCCTAGTCAAGCGCCCG
GTGGTCTAGGTGCCATGGACGACGATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.634

97.931

0.545
  ssb Vibrio cholerae strain A1552

63.115

84.138

0.531
  ssb Neisseria meningitidis MC58

43.103

100

0.517
  ssb Neisseria gonorrhoeae MS11

43.103

100

0.517