Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   NI391_RS13345 Genome accession   NZ_CP099951
Coordinates   2913929..2914573 (+) Length   214 a.a.
NCBI ID   WP_005381237.1    Uniprot ID   A0A2I3CB98
Organism   Vibrio alginolyticus strain Isc25B     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2904827..2912944 2913929..2914573 flank 985


Gene organization within MGE regions


Location: 2904827..2914573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI391_RS13310 (NI391_13320) - 2904827..2907073 (-) 2247 WP_315867610.1 AAA family ATPase -
  NI391_RS13315 (NI391_13325) - 2907070..2907516 (-) 447 WP_315867611.1 VPA1267 family protein -
  NI391_RS13320 (NI391_13330) - 2907516..2907956 (-) 441 WP_055452988.1 hypothetical protein -
  NI391_RS13325 (NI391_13335) - 2907959..2910016 (-) 2058 WP_315867612.1 integrase -
  NI391_RS13330 (NI391_13340) - 2910013..2911608 (-) 1596 WP_315867613.1 site-specific integrase -
  NI391_RS13335 (NI391_13345) - 2911601..2912944 (-) 1344 WP_315867614.1 site-specific integrase -
  NI391_RS13340 (NI391_13350) ssb 2913112..2913651 (-) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene
  NI391_RS13345 (NI391_13355) qstR 2913929..2914573 (+) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24397.32 Da        Isoelectric Point: 9.8721

>NTDB_id=702854 NI391_RS13345 WP_005381237.1 2913929..2914573(+) (qstR) [Vibrio alginolyticus strain Isc25B]
MRKSAYARKLFLISMEDNAQKKVAALEKYVDMSIPVISTAALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGVFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=702854 NI391_RS13345 WP_005381237.1 2913929..2914573(+) (qstR) [Vibrio alginolyticus strain Isc25B]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAAGTGGCGGCACTCGA
AAAGTACGTTGATATGAGCATCCCGGTGATTTCAACCGCAGCACTCATGGAAGCCAAGCCACAACACCGTAATAAAATTC
TACTGATCGACTTCAGTGAACATAAATCACTTGTTCAATCGATCAAAAACTTGCCTCTTGTATGGAAAAACTTTGAAACC
GTTGTCTTCAACGTGCCTAAAAGACTAACCACAGATGAACTTCTTTCATTTGGTCAATTAAAAGGTGTGTTTTATTCTGA
AGATACGCTAGAGCAAATTGGAGAAGGGTTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGCAATGTCATTAATACTCATACTGCACCAGCTACGGTAGACCTAACCATTCGTGAGCTACAA
GTACTGCGTTGCCTACAAGCTGGCGCCTCGAACAGTCAGATGGCCGAGGAGTTATTCGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCCGTAAAGAACCGAGTACAGGCAATCGCCTGGGCAGACCAAAACTTAATGT
CATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CB98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

94.86

100

0.949
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

51.869

100

0.519