Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NI391_RS13340 Genome accession   NZ_CP099951
Coordinates   2913112..2913651 (-) Length   179 a.a.
NCBI ID   WP_005387798.1    Uniprot ID   A0A2I3CBE0
Organism   Vibrio alginolyticus strain Isc25B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2904827..2912944 2913112..2913651 flank 168


Gene organization within MGE regions


Location: 2904827..2913651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI391_RS13310 (NI391_13320) - 2904827..2907073 (-) 2247 WP_315867610.1 AAA family ATPase -
  NI391_RS13315 (NI391_13325) - 2907070..2907516 (-) 447 WP_315867611.1 VPA1267 family protein -
  NI391_RS13320 (NI391_13330) - 2907516..2907956 (-) 441 WP_055452988.1 hypothetical protein -
  NI391_RS13325 (NI391_13335) - 2907959..2910016 (-) 2058 WP_315867612.1 integrase -
  NI391_RS13330 (NI391_13340) - 2910013..2911608 (-) 1596 WP_315867613.1 site-specific integrase -
  NI391_RS13335 (NI391_13345) - 2911601..2912944 (-) 1344 WP_315867614.1 site-specific integrase -
  NI391_RS13340 (NI391_13350) ssb 2913112..2913651 (-) 540 WP_005387798.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19902.97 Da        Isoelectric Point: 4.9164

>NTDB_id=702853 NI391_RS13340 WP_005387798.1 2913112..2913651(-) (ssb) [Vibrio alginolyticus strain Isc25B]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQPQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=702853 NI391_RS13340 WP_005387798.1 2913112..2913651(-) (ssb) [Vibrio alginolyticus strain Isc25B]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGCCAAGATCGCTACTCAACTGAGGTAGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACCACAACAACAGGCTCCGCAG
CAACCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3CBE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.781

100

0.816
  ssb Glaesserella parasuis strain SC1401

54.922

100

0.592
  ssb Neisseria meningitidis MC58

45.405

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.369

100

0.464