Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   NI392_RS14180 Genome accession   NZ_CP099950
Coordinates   1307083..1307670 (+) Length   195 a.a.
NCBI ID   WP_315874305.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain Isc1B     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1302083..1312670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI392_RS14160 (NI392_14150) panP 1302162..1303808 (-) 1647 WP_104975246.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  NI392_RS14165 (NI392_14155) - 1304020..1304532 (-) 513 WP_104975247.1 hypothetical protein -
  NI392_RS14170 (NI392_14160) - 1304741..1305646 (-) 906 WP_005378011.1 lysine exporter LysO family protein -
  NI392_RS14175 (NI392_14165) - 1305793..1306713 (-) 921 WP_005378009.1 HDOD domain-containing protein -
  NI392_RS14180 (NI392_14170) tfoX 1307083..1307670 (+) 588 WP_315874305.1 TfoX/Sxy family DNA transformation protein Regulator
  NI392_RS14185 (NI392_14175) - 1307864..1308412 (-) 549 WP_005378006.1 hypothetical protein -
  NI392_RS14190 (NI392_14180) - 1308704..1309201 (-) 498 WP_005378005.1 response regulator -
  NI392_RS14195 (NI392_14185) - 1309198..1311138 (-) 1941 WP_104975248.1 ATP-binding protein -
  NI392_RS14200 (NI392_14190) - 1311325..1312593 (+) 1269 WP_104975249.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22446.75 Da        Isoelectric Point: 8.0901

>NTDB_id=702796 NI392_RS14180 WP_315874305.1 1307083..1307670(+) (tfoX) [Vibrio alginolyticus strain Isc1B]
MDMTDQAFFKYVRTFSEYQKRSMFGGIGLFTDDAMFALVSNDCCYLRGGNGLDEVFTQLSCEKYKHVKKQTTATVNYYDV
TDLFESGYVGFDELVQKSIEYSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGVDDVETFLELGPVKVFNKVKTAYGN
DVDVKLLWKFAGATDGVHWKLIQEPRKKQLLALCD

Nucleotide


Download         Length: 588 bp        

>NTDB_id=702796 NI392_RS14180 WP_315874305.1 1307083..1307670(+) (tfoX) [Vibrio alginolyticus strain Isc1B]
ATGGACATGACAGACCAAGCTTTTTTTAAATATGTACGCACCTTCAGTGAGTACCAAAAACGTTCTATGTTCGGTGGTAT
TGGTTTATTCACCGATGATGCTATGTTTGCGCTTGTCAGCAATGATTGCTGCTACTTACGTGGTGGTAATGGGCTAGATG
AAGTGTTTACTCAACTGAGCTGTGAGAAGTATAAGCACGTCAAAAAACAGACGACGGCAACCGTAAATTATTATGATGTA
ACCGATTTATTCGAATCCGGATATGTAGGGTTTGATGAACTGGTACAGAAATCAATTGAATACTCAATTAAGGAACGGAA
ATATCAAAAGTCCTCTGCCAGTAGACGCTTAAGAGACTTACCCAACATGCAACTAACCCTTGAACGTATGGTCAAGAAAG
CCGGTGTTGATGACGTAGAAACCTTTTTAGAACTTGGACCTGTAAAAGTCTTCAACAAAGTTAAAACGGCTTACGGTAAT
GATGTTGATGTAAAGCTACTGTGGAAATTTGCTGGTGCAACTGATGGCGTACATTGGAAACTGATCCAAGAGCCGCGTAA
AAAACAGTTATTGGCACTGTGTGACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-100)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

89.231

100

0.892
  tfoX Vibrio campbellii strain DS40M4

87.179

100

0.872
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

66.146

98.462

0.651
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

66.146

98.462

0.651
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

66.146

98.462

0.651
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

66.146

98.462

0.651
  tfoX Vibrio cholerae strain A1552

66.146

98.462

0.651
  tfoX Aliivibrio fischeri ES114

59.162

97.949

0.579