Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | NI384_RS01600 | Genome accession | NZ_CP099928 |
| Coordinates | 336743..337336 (+) | Length | 197 a.a. |
| NCBI ID | WP_005496571.1 | Uniprot ID | A0A0F2HLP7 |
| Organism | Vibrio parahaemolyticus strain BM24B | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 331743..342336
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NI384_RS01585 (NI384_01585) | - | 332459..335029 (-) | 2571 | WP_308385385.1 | PBP1A family penicillin-binding protein | - |
| NI384_RS01590 (NI384_01590) | pilM | 335172..336188 (+) | 1017 | WP_005496568.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| NI384_RS01595 (NI384_01595) | pilN | 336172..336750 (+) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| NI384_RS01600 (NI384_01600) | pilO | 336743..337336 (+) | 594 | WP_005496571.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| NI384_RS01605 (NI384_01605) | pilP | 337326..337841 (+) | 516 | WP_025794802.1 | pilus assembly protein PilP | Machinery gene |
| NI384_RS01610 (NI384_01610) | pilQ | 337873..339621 (+) | 1749 | WP_308385386.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| NI384_RS01615 (NI384_01615) | aroK | 339810..340328 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| NI384_RS01620 (NI384_01620) | aroB | 340360..341460 (+) | 1101 | WP_140244873.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23019.57 Da Isoelectric Point: 4.9419
>NTDB_id=702666 NI384_RS01600 WP_005496571.1 336743..337336(+) (pilO) [Vibrio parahaemolyticus strain BM24B]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDGK
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDGK
Nucleotide
Download Length: 594 bp
>NTDB_id=702666 NI384_RS01600 WP_005496571.1 336743..337336(+) (pilO) [Vibrio parahaemolyticus strain BM24B]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCTAACAAGGTAGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTTACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGCATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGGGAAATAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCTAACAAGGTAGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTTACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGCATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGGGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
94.211 |
96.447 |
0.909 |
| pilO | Vibrio cholerae strain A1552 |
73.298 |
96.954 |
0.711 |