Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NI384_RS01605 Genome accession   NZ_CP099928
Coordinates   337326..337841 (+) Length   171 a.a.
NCBI ID   WP_025794802.1    Uniprot ID   A0A9Q3UJD7
Organism   Vibrio parahaemolyticus strain BM24B     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332326..342841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI384_RS01585 (NI384_01585) - 332459..335029 (-) 2571 WP_308385385.1 PBP1A family penicillin-binding protein -
  NI384_RS01590 (NI384_01590) pilM 335172..336188 (+) 1017 WP_005496568.1 type IV pilus biogenesis protein PilM Machinery gene
  NI384_RS01595 (NI384_01595) pilN 336172..336750 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  NI384_RS01600 (NI384_01600) pilO 336743..337336 (+) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  NI384_RS01605 (NI384_01605) pilP 337326..337841 (+) 516 WP_025794802.1 pilus assembly protein PilP Machinery gene
  NI384_RS01610 (NI384_01610) pilQ 337873..339621 (+) 1749 WP_308385386.1 type IV pilus secretin PilQ family protein Machinery gene
  NI384_RS01615 (NI384_01615) aroK 339810..340328 (+) 519 WP_005381319.1 shikimate kinase AroK -
  NI384_RS01620 (NI384_01620) aroB 340360..341460 (+) 1101 WP_140244873.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18801.89 Da        Isoelectric Point: 10.3608

>NTDB_id=702667 NI384_RS01605 WP_025794802.1 337326..337841(+) (pilP) [Vibrio parahaemolyticus strain BM24B]
MGNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVETLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=702667 NI384_RS01605 WP_025794802.1 337326..337841(+) (pilP) [Vibrio parahaemolyticus strain BM24B]
ATGGGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGACGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAGGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTCTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGCAATAACGGTAAGGTCACGCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

82.456

100

0.825
  pilP Vibrio cholerae strain A1552

57.558

100

0.579