Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NI388_RS01955 Genome accession   NZ_CP099919
Coordinates   417276..417806 (+) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain Isc14B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 412276..422806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI388_RS01945 (NI388_01945) galU 415222..416094 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NI388_RS01950 (NI388_01950) qstR 416353..416997 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  NI388_RS01955 (NI388_01955) ssb 417276..417806 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  NI388_RS01960 (NI388_01960) csrD 418047..420056 (+) 2010 WP_025547508.1 RNase E specificity factor CsrD -
  NI388_RS01965 (NI388_01965) - 420068..421513 (+) 1446 WP_021450081.1 MSHA biogenesis protein MshI -
  NI388_RS01970 (NI388_01970) gspM 421510..422160 (+) 651 WP_005497276.1 type II secretion system protein GspM -
  NI388_RS01975 (NI388_01975) - 422153..422482 (+) 330 WP_178310142.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=702543 NI388_RS01955 WP_005466625.1 417276..417806(+) (ssb) [Vibrio parahaemolyticus strain Isc14B]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=702543 NI388_RS01955 WP_005466625.1 417276..417806(+) (ssb) [Vibrio parahaemolyticus strain Isc14B]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483