Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NIY04_RS01650 Genome accession   NZ_CP099856
Coordinates   346574..347392 (+) Length   272 a.a.
NCBI ID   WP_000149378.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 17978S     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341574..352392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY04_RS01615 (NIY04_01615) - 342156..342286 (-) 131 Protein_308 hypothetical protein -
  NIY04_RS01620 (NIY04_01620) rpoZ 342325..342603 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NIY04_RS01625 (NIY04_01625) gmk 342676..343305 (-) 630 WP_000015937.1 guanylate kinase -
  NIY04_RS01630 (NIY04_01630) ispH 343428..344378 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NIY04_RS01635 (NIY04_01635) fimU 344548..345021 (+) 474 WP_001214058.1 GspH/FimT family pseudopilin Machinery gene
  NIY04_RS01640 (NIY04_01640) pilV 345015..345575 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  NIY04_RS01645 (NIY04_01645) pilW 345576..346577 (+) 1002 WP_000079196.1 PilW family protein Machinery gene
  NIY04_RS01650 (NIY04_01650) pilX 346574..347392 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NIY04_RS01655 (NIY04_01655) pilY1 347404..351258 (+) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  NIY04_RS01660 (NIY04_01660) pilY2 351271..351753 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  NIY04_RS01665 (NIY04_01665) pilE 351750..352175 (+) 426 WP_000788346.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28862.69 Da        Isoelectric Point: 5.6905

>NTDB_id=701933 NIY04_RS01650 WP_000149378.1 346574..347392(+) (pilX) [Acinetobacter baumannii strain 17978S]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMTDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=701933 NIY04_RS01650 WP_000149378.1 346574..347392(+) (pilX) [Acinetobacter baumannii strain 17978S]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGACTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989