Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NIY04_RS01665 Genome accession   NZ_CP099856
Coordinates   351750..352175 (+) Length   141 a.a.
NCBI ID   WP_000788346.1    Uniprot ID   A0A0J8T367
Organism   Acinetobacter baumannii strain 17978S     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346750..357175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY04_RS01655 (NIY04_01655) pilY1 347404..351258 (+) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  NIY04_RS01660 (NIY04_01660) pilY2 351271..351753 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  NIY04_RS01665 (NIY04_01665) pilE 351750..352175 (+) 426 WP_000788346.1 type IV pilin protein Machinery gene
  NIY04_RS01670 (NIY04_01670) rpsP 352322..352573 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  NIY04_RS01675 (NIY04_01675) rimM 352593..353141 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  NIY04_RS01680 (NIY04_01680) trmD 353187..353927 (+) 741 WP_000464596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  NIY04_RS01685 (NIY04_01685) rplS 354135..354503 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  NIY04_RS01690 (NIY04_01690) - 354555..355496 (-) 942 WP_085943440.1 triacylglycerol lipase -
  NIY04_RS01695 (NIY04_01695) - 355611..356645 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15282.50 Da        Isoelectric Point: 7.8144

>NTDB_id=701936 NIY04_RS01665 WP_000788346.1 351750..352175(+) (pilE) [Acinetobacter baumannii strain 17978S]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKMVNNRYPSNTTIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=701936 NIY04_RS01665 WP_000788346.1 351750..352175(+) (pilE) [Acinetobacter baumannii strain 17978S]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACTTTAGAGTCTC
AAAAAATGGTGAATAACCGTTATCCTTCAAATACAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8T367

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

99.291

100

0.993
  comF Acinetobacter baylyi ADP1

52.857

99.291

0.525