Detailed information NTG0701935

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP32_RS28420
• Genome accession: NZ_CP115285
• Coordinates: 6109002..6110006 (+)
• Length: 334 a.a.
• NCBI ID: WP_003109327.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain F007
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6104002..6115006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP32_RS28390 (PCP32_28385)	fghA	6104095..6104946 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
PCP32_RS28395 (PCP32_28390)	ispF	6105017..6105490 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP32_RS28400 (PCP32_28395)	truD	6105487..6106554 (+)	1068	WP_058152134.1	tRNA pseudouridine(13) synthase TruD	-
PCP32_RS28405 (PCP32_28400)	surE	6106542..6107291 (+)	750	WP_058152135.1	5'/3'-nucleotidase SurE	-
PCP32_RS28410 (PCP32_28405)	-	6107324..6107958 (+)	635	Protein_5624	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP32_RS28415 (PCP32_28410)	-	6108004..6108897 (+)	894	WP_058152136.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP32_RS28420 (PCP32_28415)	rpoS	6109002..6110006 (+)	1005	WP_003109327.1	RNA polymerase sigma factor RpoS	Regulator
PCP32_RS28425 (PCP32_28420)	fdxA	6110433..6110756 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PCP32_RS28430 (PCP32_28425)	mutS	6110823..6113390 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
PCP32_RS28435 (PCP32_28430)	-	6113516..6114523 (-)	1008	WP_031638797.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38265.41 Da
• Isoelectric Point: 5.0478

>NTDB_id=701935 PCP32_RS28420 WP_003109327.1 6109002..6110006(+) (rpoS) [Pseudomonas aeruginosa strain F007]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRTTPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=701935 PCP32_RS28420 WP_003109327.1 6109002..6110006(+) (rpoS) [Pseudomonas aeruginosa strain F007]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCTGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGACAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653