Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   NIY04_RS01635 Genome accession   NZ_CP099856
Coordinates   344548..345021 (+) Length   157 a.a.
NCBI ID   WP_001214058.1    Uniprot ID   A0A1E3M9I3
Organism   Acinetobacter baumannii strain 17978S     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339548..350021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY04_RS01610 (NIY04_01610) - 340011..342116 (-) 2106 WP_001117590.1 HD domain-containing protein -
  NIY04_RS01615 (NIY04_01615) - 342156..342286 (-) 131 Protein_308 hypothetical protein -
  NIY04_RS01620 (NIY04_01620) rpoZ 342325..342603 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  NIY04_RS01625 (NIY04_01625) gmk 342676..343305 (-) 630 WP_000015937.1 guanylate kinase -
  NIY04_RS01630 (NIY04_01630) ispH 343428..344378 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NIY04_RS01635 (NIY04_01635) fimU 344548..345021 (+) 474 WP_001214058.1 GspH/FimT family pseudopilin Machinery gene
  NIY04_RS01640 (NIY04_01640) pilV 345015..345575 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  NIY04_RS01645 (NIY04_01645) pilW 345576..346577 (+) 1002 WP_000079196.1 PilW family protein Machinery gene
  NIY04_RS01650 (NIY04_01650) pilX 346574..347392 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16823.45 Da        Isoelectric Point: 9.3085

>NTDB_id=701930 NIY04_RS01635 WP_001214058.1 344548..345021(+) (fimU) [Acinetobacter baumannii strain 17978S]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPS
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=701930 NIY04_RS01635 WP_001214058.1 344548..345021(+) (fimU) [Acinetobacter baumannii strain 17978S]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCTCT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3M9I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987