Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NIY04_RS00995 Genome accession   NZ_CP099856
Coordinates   222654..223235 (+) Length   193 a.a.
NCBI ID   WP_001215080.1    Uniprot ID   A0A009T283
Organism   Acinetobacter baumannii strain 17978S     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 217654..228235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY04_RS00970 (NIY04_00970) - 218275..218628 (+) 354 WP_000580168.1 DUF1304 domain-containing protein -
  NIY04_RS00975 (NIY04_00975) - 218681..219022 (+) 342 WP_000263328.1 GlpM family protein -
  NIY04_RS00980 (NIY04_00980) tenA 219072..219746 (-) 675 WP_000899418.1 thiaminase II -
  NIY04_RS00985 (NIY04_00985) - 220009..221091 (+) 1083 WP_004833586.1 DUF475 domain-containing protein -
  NIY04_RS00990 (NIY04_00990) - 221238..222602 (+) 1365 WP_000980462.1 MFS transporter -
  NIY04_RS00995 (NIY04_00995) ssb 222654..223235 (+) 582 WP_001215080.1 single-stranded DNA-binding protein Machinery gene
  NIY04_RS01000 (NIY04_01000) - 223276..223599 (-) 324 WP_000082714.1 AzlD domain-containing protein -
  NIY04_RS01005 (NIY04_01005) - 223596..224291 (-) 696 WP_000431605.1 AzlC family ABC transporter permease -
  NIY04_RS01010 (NIY04_01010) - 224360..224908 (+) 549 WP_000081859.1 XRE family transcriptional regulator -
  NIY04_RS01015 (NIY04_01015) - 225214..226656 (+) 1443 WP_000718865.1 amino acid permease -
  NIY04_RS01020 (NIY04_01020) - 226721..228220 (-) 1500 WP_001257159.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20978.80 Da        Isoelectric Point: 6.4822

>NTDB_id=701924 NIY04_RS00995 WP_001215080.1 222654..223235(+) (ssb) [Acinetobacter baumannii strain 17978S]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=701924 NIY04_RS00995 WP_001215080.1 222654..223235(+) (ssb) [Acinetobacter baumannii strain 17978S]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGGGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGCGGTTTC
GGTAATGGTGGCAATAGCCCACAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T283

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394