Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LNQ40_RS16055 Genome accession   NZ_CP099815
Coordinates   3402404..3402955 (-) Length   183 a.a.
NCBI ID   WP_004719395.1    Uniprot ID   -
Organism   Yersinia ruckeri strain NVI-11050     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3397404..3407955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNQ40_RS16040 (LNQ40_016030) - 3397790..3399439 (-) 1650 WP_038241247.1 Na+/H+ antiporter -
  LNQ40_RS16045 (LNQ40_016035) - 3399648..3401015 (-) 1368 WP_004719392.1 NCS2 family permease -
  LNQ40_RS16050 (LNQ40_016040) - 3401461..3402129 (-) 669 WP_004719393.1 glutathione S-transferase family protein -
  LNQ40_RS16055 (LNQ40_016045) ssb 3402404..3402955 (-) 552 WP_004719395.1 single-stranded DNA-binding protein SSB1 Machinery gene
  LNQ40_RS16060 (LNQ40_016050) uvrA 3403244..3406078 (+) 2835 WP_004719397.1 excinuclease ABC subunit UvrA -
  LNQ40_RS16065 (LNQ40_016055) - 3406128..3406481 (-) 354 WP_038241248.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19455.41 Da        Isoelectric Point: 4.9567

>NTDB_id=701843 LNQ40_RS16055 WP_004719395.1 3402404..3402955(-) (ssb) [Yersinia ruckeri strain NVI-11050]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWQDQSGQERYTTEVVVNVGGTMQMLGGRQGGGAPAGGTPAGSNDGAQGGWGQPQQPQGSNQFSGGQTSRPAQ
PAPAPQQQGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=701843 LNQ40_RS16055 WP_004719395.1 3402404..3402955(-) (ssb) [Yersinia ruckeri strain NVI-11050]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGCTACATGCCGAACGG
TGGGGCAGTTGCCAACATCACATTGGCCACTTCCGAAAGCTGGCGTGATAAGCAAACCGGCGAGCAGAAAGAAAAAACCG
AATGGCACCGCGTAGTGTTGTTCGGCAAGCTGGCAGAAGTCGCGGGTGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCGCACTGCAAACCCGGAAATGGCAGGATCAAAGTGGCCAGGAACGTTACACCACCGAAGTGGTTGTTAACGTGGG
TGGTACCATGCAAATGCTGGGTGGTCGTCAAGGCGGCGGTGCTCCAGCGGGTGGTACACCAGCGGGTTCCAATGATGGTG
CGCAAGGCGGTTGGGGTCAGCCTCAGCAACCTCAGGGTAGCAATCAGTTCAGCGGTGGCCAGACTTCACGTCCAGCACAG
CCTGCACCCGCGCCACAGCAGCAAGGCGGCAATGAGCCACCAATGGACTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.269

100

0.765
  ssb Glaesserella parasuis strain SC1401

57.609

100

0.579
  ssb Neisseria meningitidis MC58

45.989

100

0.47
  ssb Neisseria gonorrhoeae MS11

45.946

100

0.464