Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LNQ41_RS15185 Genome accession   NZ_CP099808
Coordinates   3311465..3312007 (-) Length   180 a.a.
NCBI ID   WP_248594102.1    Uniprot ID   -
Organism   Yersinia ruckeri strain NVI-11076     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3306465..3317007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNQ41_RS15170 (LNQ41_015165) - 3306851..3308500 (-) 1650 WP_038241247.1 Na+/H+ antiporter -
  LNQ41_RS15175 (LNQ41_015170) - 3308709..3310076 (-) 1368 WP_004719392.1 NCS2 family permease -
  LNQ41_RS15180 (LNQ41_015175) - 3310522..3311190 (-) 669 WP_004719393.1 glutathione S-transferase family protein -
  LNQ41_RS15185 (LNQ41_015180) ssb 3311465..3312007 (-) 543 WP_248594102.1 single-stranded DNA-binding protein Machinery gene
  LNQ41_RS15190 (LNQ41_015185) uvrA 3312296..3315130 (+) 2835 WP_004719397.1 excinuclease ABC subunit UvrA -
  LNQ41_RS15195 (LNQ41_015190) - 3315180..3315533 (-) 354 WP_038241248.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19102.03 Da        Isoelectric Point: 4.9567

>NTDB_id=701755 LNQ41_RS15185 WP_248594102.1 3311465..3312007(-) (ssb) [Yersinia ruckeri strain NVI-11076]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWQDQSGQERYTTEVVVNVGGTMQMLGGRQGGGAPAGGTPAGSNDGAQGGWGQPQGSNQFSGGQTSRPAQPAP
APQQQGGNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=701755 LNQ41_RS15185 WP_248594102.1 3311465..3312007(-) (ssb) [Yersinia ruckeri strain NVI-11076]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGCTACATGCCGAACGG
TGGGGCAGTTGCCAACATCACATTGGCCACTTCCGAAAGCTGGCGTGATAAGCAAACCGGCGAGCAGAAAGAAAAAACCG
AATGGCACCGCGTAGTGTTGTTCGGCAAGCTGGCAGAAGTCGCGGGTGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCGCACTGCAAACCCGGAAATGGCAGGATCAAAGTGGCCAGGAACGTTACACCACCGAAGTGGTTGTTAACGTGGG
TGGTACCATGCAAATGCTGGGTGGTCGTCAAGGCGGCGGTGCTCCAGCGGGTGGTACACCAGCGGGTTCTAATGATGGTG
CGCAAGGCGGTTGGGGTCAACCTCAGGGTAGCAATCAGTTCAGCGGTGGCCAGACTTCACGTCCAGCACAGCCTGCACCC
GCGCCACAGCAGCAAGGCGGCAATGAGCCACCAATGGACTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.767
  ssb Glaesserella parasuis strain SC1401

57.609

100

0.589
  ssb Neisseria meningitidis MC58

46.524

100

0.483
  ssb Neisseria gonorrhoeae MS11

46.486

100

0.478