Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NHM99_RS10900 Genome accession   NZ_CP099801
Coordinates   2106633..2106968 (+) Length   111 a.a.
NCBI ID   WP_000982010.1    Uniprot ID   A0A1J9Y2D4
Organism   Bacillus paranthracis strain SSBC101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2101633..2111968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHM99_RS10875 (NHM99_10875) - 2101867..2102658 (-) 792 WP_000499684.1 hypothetical protein -
  NHM99_RS10880 (NHM99_10880) - 2102768..2103415 (+) 648 WP_000165947.1 HD domain-containing protein -
  NHM99_RS10885 (NHM99_10885) - 2103412..2105307 (+) 1896 WP_000783207.1 ABC-F family ATP-binding cassette domain-containing protein -
  NHM99_RS10890 (NHM99_10890) - 2105383..2106114 (+) 732 WP_001260642.1 Bax inhibitor-1/YccA family protein -
  NHM99_RS10895 (NHM99_10895) - 2106220..2106474 (+) 255 WP_000975123.1 DUF4318 domain-containing protein -
  NHM99_RS10900 (NHM99_10900) ssbA 2106633..2106968 (+) 336 WP_000982010.1 single-stranded DNA-binding protein Machinery gene
  NHM99_RS10905 (NHM99_10905) - 2106997..2107587 (-) 591 WP_000943173.1 TetR/AcrR family transcriptional regulator -
  NHM99_RS10910 (NHM99_10910) - 2107689..2108822 (-) 1134 WP_001066845.1 FAD-dependent monooxygenase -
  NHM99_RS10915 (NHM99_10915) - 2109081..2110208 (+) 1128 WP_000692573.1 conserved virulence factor C family protein -
  NHM99_RS10920 (NHM99_10920) - 2110212..2110595 (+) 384 WP_000634897.1 thiol-disulfide oxidoreductase DCC family protein -
  NHM99_RS10925 (NHM99_10925) - 2110679..2111113 (+) 435 WP_000063713.1 BrxA/BrxB family bacilliredoxin -
  NHM99_RS10930 (NHM99_10930) - 2111163..2111939 (+) 777 WP_000637441.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12729.53 Da        Isoelectric Point: 9.4344

>NTDB_id=701693 NHM99_RS10900 WP_000982010.1 2106633..2106968(+) (ssbA) [Bacillus paranthracis strain SSBC101]
MMNRVVLIGRLTKEPELYYTKQGVAYARACVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=701693 NHM99_RS10900 WP_000982010.1 2106633..2106968(+) (ssbA) [Bacillus paranthracis strain SSBC101]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCATATGC
ACGAGCATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTAGATTTTATTAATTGTGTCGTAT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGCTCACTTGTTGGGATTACAGGGCGTATTCAGACGAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATAACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9Y2D4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

95.495

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

99.099

0.423
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssbA Streptococcus mutans UA159

40

99.099

0.396