Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | M2Y57_RS05130 | Genome accession | NZ_AP023345 |
| Coordinates | 1082881..1083891 (+) | Length | 336 a.a. |
| NCBI ID | WP_000664522.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain JSHR31 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1077881..1088891
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2Y57_RS05105 (JSHR31_10030) | - | 1078062..1079384 (-) | 1323 | WP_248425654.1 | M23 family metallopeptidase | - |
| M2Y57_RS05110 (JSHR31_10040) | - | 1079394..1080329 (-) | 936 | WP_248425655.1 | outer membrane beta-barrel protein | - |
| M2Y57_RS05115 (JSHR31_10050) | - | 1080341..1081195 (-) | 855 | WP_154427512.1 | outer membrane beta-barrel protein | - |
| M2Y57_RS05120 (JSHR31_10060) | - | 1081185..1081919 (-) | 735 | WP_248425656.1 | hypothetical protein | - |
| M2Y57_RS05125 (JSHR31_10070) | panB | 1082068..1082880 (+) | 813 | WP_248425657.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| M2Y57_RS05130 (JSHR31_10080) | ruvB | 1082881..1083891 (+) | 1011 | WP_000664522.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| M2Y57_RS05135 (JSHR31_10090) | tatB | 1083959..1084435 (+) | 477 | WP_029646867.1 | Sec-independent protein translocase protein TatB | - |
| M2Y57_RS05140 (JSHR31_10100) | tatC | 1084428..1085189 (+) | 762 | WP_248425658.1 | twin-arginine translocase subunit TatC | - |
| M2Y57_RS05145 (JSHR31_10110) | queA | 1085190..1086227 (+) | 1038 | WP_248425659.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| M2Y57_RS05150 (JSHR31_10120) | rsmG | 1086224..1086760 (+) | 537 | WP_248425660.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| M2Y57_RS05155 (JSHR31_10130) | - | 1086754..1086984 (+) | 231 | WP_001919360.1 | PP0621 family protein | - |
| M2Y57_RS05160 (JSHR31_10140) | - | 1086987..1087394 (+) | 408 | WP_248425661.1 | hypothetical protein | - |
| M2Y57_RS05170 (JSHR31_10150) | - | 1087527..1088129 (-) | 603 | WP_000291636.1 | outer membrane protein | - |
| M2Y57_RS05175 (JSHR31_10160) | - | 1088418..1088792 (+) | 375 | WP_000772153.1 | chemotaxis response regulator CheY | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37293.24 Da Isoelectric Point: 6.0715
>NTDB_id=70165 M2Y57_RS05130 WP_000664522.1 1082881..1083891(+) (ruvB) [Helicobacter pylori strain JSHR31]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=70165 M2Y57_RS05130 WP_000664522.1 1082881..1083891(+) (ruvB) [Helicobacter pylori strain JSHR31]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAGTTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
GGCCCTTATCATCAAAAAAGCCGCCGCTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAACGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAACGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCCACTTTAAACCCTCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAGTTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
GGCCCTTATCATCAAAAAAGCCGCCGCTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAACGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAACGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCACGCGCTTTTAAAAATCCCCACTTTAAACCCTCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.321 |
100 |
0.973 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
54.18 |
96.131 |
0.521 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
50.789 |
94.345 |
0.479 |