Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NH234_RS26660 Genome accession   NZ_CP099760
Coordinates   5811338..5811856 (-) Length   172 a.a.
NCBI ID   WP_007966163.1    Uniprot ID   A0A031FLF5
Organism   Pseudomonas sp. stari2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5806338..5816856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH234_RS26630 (NH234_26605) - 5806810..5807478 (+) 669 WP_085712342.1 YjfI family protein -
  NH234_RS26635 (NH234_26610) - 5807496..5808194 (+) 699 WP_085733009.1 PspA/IM30 family protein -
  NH234_RS26640 (NH234_26615) - 5808318..5808953 (+) 636 WP_085733010.1 DUF2491 family protein -
  NH234_RS26645 (NH234_26620) - 5808967..5809392 (+) 426 WP_085712345.1 DUF350 domain-containing protein -
  NH234_RS26650 (NH234_26625) - 5809410..5810102 (+) 693 WP_085733011.1 DUF1190 domain-containing protein -
  NH234_RS26655 (NH234_26630) - 5810105..5811262 (+) 1158 WP_367254859.1 glutathionylspermidine synthase family protein -
  NH234_RS26660 (NH234_26635) ssb 5811338..5811856 (-) 519 WP_007966163.1 single-stranded DNA-binding protein Machinery gene
  NH234_RS26665 (NH234_26640) - 5811866..5813263 (-) 1398 WP_085733013.1 MFS transporter -
  NH234_RS26670 (NH234_26645) uvrA 5813455..5816289 (+) 2835 WP_367254863.1 excinuclease ABC subunit UvrA -
  NH234_RS26675 (NH234_26650) bfr 5816355..5816822 (-) 468 WP_007955633.1 bacterioferritin -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19125.28 Da        Isoelectric Point: 5.9314

>NTDB_id=701576 NH234_RS26660 WP_007966163.1 5811338..5811856(-) (ssb) [Pseudomonas sp. stari2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRPAPAPQQAAPQPA
PDFDSFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=701576 NH234_RS26660 WP_007966163.1 5811338..5811856(-) (ssb) [Pseudomonas sp. stari2]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCAACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGCGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTACCAGCAGCAGGCGCCACGCC
AGCAGGCTCCGCGTCCGCAGCAGTCGGCTCCTCAGCAGCGTCCGGCCCCGGCTCCACAGCAGGCCGCGCCGCAGCCAGCT
CCGGATTTCGACAGCTTCGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031FLF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.923

100

0.616
  ssb Glaesserella parasuis strain SC1401

49.451

100

0.523
  ssb Neisseria meningitidis MC58

47.514

100

0.5
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.5