Detailed information NTG0701574

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NH234_RS25590
• Genome accession: NZ_CP099760
• Coordinates: 5583060..5584406 (+)
• Length: 448 a.a.
• NCBI ID: WP_367254674.1
• Uniprot ID: -
• Organism: Pseudomonas sp. stari2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5578060..5589406

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NH234_RS25565 (NH234_25540)	pgeF	5578262..5578996 (-)	735	WP_085732840.1	peptidoglycan editing factor PgeF	-
NH234_RS25570 (NH234_25545)	rluD	5578993..5579955 (-)	963	WP_085712174.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
NH234_RS25575 (NH234_25550)	-	5580108..5581124 (+)	1017	WP_085732841.1	outer membrane protein assembly factor BamD	-
NH234_RS25580 (NH234_25555)	-	5581251..5581484 (+)	234	WP_085712176.1	PP0621 family protein	-
NH234_RS25585 (NH234_25560)	pilS	5581474..5583063 (+)	1590	WP_367254672.1	PAS domain-containing sensor histidine kinase	Regulator
NH234_RS25590 (NH234_25565)	pilR	5583060..5584406 (+)	1347	WP_367254674.1	sigma-54-dependent transcriptional regulator	Regulator
NH234_RS25595 (NH234_25570)	thiO	5584403..5585503 (-)	1101	WP_367254676.1	glycine oxidase ThiO	-
NH234_RS25600 (NH234_25575)	-	5585561..5585962 (-)	402	WP_367254678.1	type IV pilin protein	-
NH234_RS25605 (NH234_25580)	-	5585977..5589069 (-)	3093	WP_367254680.1	pilus assembly protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50109.41 Da
• Isoelectric Point: 6.5069

>NTDB_id=701574 NH234_RS25590 WP_367254674.1 5583060..5584406(+) (pilR) [Pseudomonas sp. stari2]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLNRDTFDLCLTDMRLPDGTGLDLVQHIQHRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVATALCMPATGGVCTSIDRRLLGDSQPMRDLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAIRSVGGQQETVVNVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
SHMLKRLAHGTGQPSARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRMIEADDLRLSEGNCAAEGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=701574 NH234_RS25590 WP_367254674.1 5583060..5584406(+) (pilR) [Pseudomonas sp. stari2]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACGTTCAGCGCACGCAACCTCGGCGAAGCCCAGGCACTGCTGAACCGCGACACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCGGACGGCACCGGGCTGGACCTGGTGCAGCATATCCAGCATCGCTACCCGCAATTACCG
GTGGCGATGATCACGGCCTATGGCAGCCTGGAAACAGCGATCAACGCCCTGAAAGCCGGCGCATTCGACTTTCTGACCAA
ACCGGTGGACCTCACCCGACTGCGCGAGCTGGTCGCCACCGCACTGTGCATGCCCGCGACCGGCGGCGTCTGCACCTCGA
TTGATCGGCGCCTGCTCGGCGACTCACAACCGATGCGCGATCTGCGCAAACAGATCGACAAACTGGCCCGCAGCCAGGCG
CCGGTCTACATCAGCGGCGAGTCCGGCAGTGGCAAGGAACTGGTCGCCCGCCTGATCCACGAGCAAGGCCCGCGCGCCAG
CCAGCCGTTCGTGCCGGTGAACTGCGGGGCCATTCCTTCAGAGTTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCA
GTTTCACCGGCGCGGTGGAGGACAAACCGGGCCTGTTTCAGGCTGCCCATGGCGGCACGCTGTTTCTCGATGAAGTAGCG
GACTTGCCGCTGTCGATGCAGGTCAAGCTACTGCGGGCTATTCAGGAAAAAGCCATACGCAGCGTCGGCGGTCAGCAAGA
AACCGTGGTCAATGTGCGTATTCTCTGCGCCACTCACAAGGACCTGGACGCCGAAGTCGCCGCCGAGCGCTTTCGGCAGG
ATCTGTATTACCGGCTGAACGTGATTGAACTGCGGGTTCCGTCCCTGCGTGAACGCCGTGACGATATCGAAGCGCTGGCC
TCCCATATGCTCAAGCGCCTGGCCCACGGCACTGGCCAGCCTTCTGCCCGCCTGCATCCACAAGCGCTCGAGGCCTTGAA
GAACTATCGCTTCCCGGGGAATGTCCGTGAACTCGAGAACGTCCTCGAACGCGCGCACACGTTGTGCGAAAACCGCATGA
TTGAAGCCGACGACCTGCGCCTGAGTGAAGGCAACTGTGCGGCCGAGGGCGGCATCGCCGATCTCACGCAGATCGACAAC
CTGGAAGACTATCTGGAAAACGTCGAGCGCAAACTGATCCTGCAGGCGCTGGAGGAAACCCGCTGGAACCGTACCGCAGC
GGCCCAGCGGTTGAATCTGTCATTTCGTTCGATGCGATACAGGCTCAAGAAGCTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	78.781	98.884	0.779
pilR	Acinetobacter baumannii strain A118	48.584	100	0.498
luxO	Vibrio cholerae strain A1552	37.387	99.107	0.371