Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NH234_RS25585 Genome accession   NZ_CP099760
Coordinates   5581474..5583063 (+) Length   529 a.a.
NCBI ID   WP_367254672.1    Uniprot ID   -
Organism   Pseudomonas sp. stari2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5576474..5588063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH234_RS25565 (NH234_25540) pgeF 5578262..5578996 (-) 735 WP_085732840.1 peptidoglycan editing factor PgeF -
  NH234_RS25570 (NH234_25545) rluD 5578993..5579955 (-) 963 WP_085712174.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NH234_RS25575 (NH234_25550) - 5580108..5581124 (+) 1017 WP_085732841.1 outer membrane protein assembly factor BamD -
  NH234_RS25580 (NH234_25555) - 5581251..5581484 (+) 234 WP_085712176.1 PP0621 family protein -
  NH234_RS25585 (NH234_25560) pilS 5581474..5583063 (+) 1590 WP_367254672.1 PAS domain-containing sensor histidine kinase Regulator
  NH234_RS25590 (NH234_25565) pilR 5583060..5584406 (+) 1347 WP_367254674.1 sigma-54-dependent transcriptional regulator Regulator
  NH234_RS25595 (NH234_25570) thiO 5584403..5585503 (-) 1101 WP_367254676.1 glycine oxidase ThiO -
  NH234_RS25600 (NH234_25575) - 5585561..5585962 (-) 402 WP_367254678.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58841.70 Da        Isoelectric Point: 6.7397

>NTDB_id=701573 NH234_RS25585 WP_367254672.1 5581474..5583063(+) (pilS) [Pseudomonas sp. stari2]
MIAEATDATRKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSADDELLRNGSWLYLVLNILLVVFLENIRRPAQLF
GLALVDILLLCGLFYAAGGVASPVGNLLIVSVAISNTLLKRRIGVLIAAIGALGIVGLSFLLSFSHPLSANEYLQAGTLG
ALCFAGALLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSARTLLAQSPLEGHLID
NYSTALVERLNLWLNNPTLRPQSLKIAANGLELQPSFIALEQSPNRQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLRESEELDDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLEPWLEHFVEESREQASEH
QRIHLNIESGDFRTLMDPGQLTQILDNLLRNGWRHSALLHDPAQVWLRLFIDPESQLAVLEVQDNGPGVALDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=701573 NH234_RS25585 WP_367254672.1 5581474..5583063(+) (pilS) [Pseudomonas sp. stari2]
GTGATCGCTGAGGCGACCGACGCCACTCGCAAACAGGCCCAGCGACTGCTGCGCCTCTATCACCTCTACCGTCTGAGCGT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGTTGACGTCGGCCGACGACGAGCTGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTGTTCCTGGAGAACATCCGCCGCCCGGCCCAGTTGTTC
GGACTGGCCCTGGTCGACATCCTGCTGCTGTGCGGGCTGTTCTACGCCGCCGGCGGCGTGGCCAGTCCGGTCGGCAATCT
GCTGATCGTCTCGGTAGCCATCAGCAACACATTACTGAAACGCCGTATCGGCGTGCTGATCGCGGCTATCGGTGCACTCG
GCATTGTCGGTCTCAGCTTCCTGCTGAGCTTCAGCCATCCCCTGAGCGCCAACGAATACCTGCAGGCGGGCACCCTCGGC
GCCCTGTGTTTTGCCGGAGCGCTGCTGGTGCAAGGCTTGATCCGCCGCCTCGAAGTCAGCGAGACCCTCGCCGAGCAACG
GGCCAGCGAAGTGGTCAGCCTCGAAGCCCTCAACGCCTTGATCTTGCAACGCATGCGCACCGGCATTCTGGTCCTCGATG
AACAACGCCGGGTGCAACTGGCCAACCACAGTGCCCGGACCCTGCTGGCGCAGTCGCCCCTTGAAGGCCATTTGATCGAT
AACTATTCGACCGCGCTGGTCGAGCGCCTGAATCTGTGGCTGAACAACCCCACCCTGCGCCCTCAAAGCCTGAAAATCGC
GGCCAACGGCCTGGAACTGCAACCGAGCTTCATCGCCCTGGAGCAGAGCCCGAACCGCCAGACCCTGGTGTTTCTCGAAG
ACCTCGCGCAAATCGCCCAACAGGCCCAGCAACTGAAACTCGCCGCACTTGGGCGCCTGACCGCCGGCATCGCCCACGAG
ATCCGTAATCCGCTGGGTGCCATCAGTCATGCCGCACAGTTGCTGCGGGAATCCGAGGAACTCGACGATGCGGATCGGCG
TCTGACGCAGATCATCCAGGATCACTCCCAGCGCATGAACCGAGTCATTGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGCGCCCCGCAGCGACTCGATCTCGAGCCATGGCTCGAGCACTTCGTCGAGGAAAGCCGCGAACAGGCCAGCGAGCAC
CAACGGATTCATCTGAACATCGAATCCGGGGATTTCCGGACCCTGATGGACCCGGGGCAACTGACGCAAATTCTCGACAA
TCTGTTGCGCAACGGCTGGCGGCACAGCGCCCTGCTGCACGATCCGGCGCAGGTCTGGCTCCGGCTGTTCATCGACCCCG
AGAGCCAACTGGCCGTGCTCGAAGTGCAGGACAATGGCCCCGGCGTGGCGCTGGATCAGCAGGCGCATCTGTTCGAACCT
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.434

100

0.595