Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NH234_RS22125 Genome accession   NZ_CP099760
Coordinates   4851990..4852625 (-) Length   211 a.a.
NCBI ID   WP_162803506.1    Uniprot ID   -
Organism   Pseudomonas sp. stari2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4846990..4857625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH234_RS22090 (NH234_22070) - 4847390..4847860 (-) 471 WP_085710940.1 (2Fe-2S)-binding protein -
  NH234_RS22095 (NH234_22075) murB 4848104..4849123 (-) 1020 WP_367254323.1 UDP-N-acetylmuramate dehydrogenase -
  NH234_RS22100 (NH234_22080) - 4849120..4849584 (-) 465 WP_367254324.1 low molecular weight protein-tyrosine-phosphatase -
  NH234_RS22105 (NH234_22085) kdsB 4849584..4850348 (-) 765 WP_273905044.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NH234_RS22110 (NH234_22090) - 4850345..4850530 (-) 186 WP_003179363.1 Trm112 family protein -
  NH234_RS22115 (NH234_22095) lpxK 4850555..4851565 (-) 1011 WP_367254325.1 tetraacyldisaccharide 4'-kinase -
  NH234_RS22120 (NH234_22100) - 4851565..4851993 (-) 429 WP_007950767.1 biopolymer transporter ExbD -
  NH234_RS22125 (NH234_22105) exbB 4851990..4852625 (-) 636 WP_162803506.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NH234_RS22130 (NH234_22110) - 4852715..4854957 (-) 2243 Protein_4374 DNA internalization-related competence protein ComEC/Rec2 -
  NH234_RS22135 (NH234_22115) - 4855112..4855630 (+) 519 WP_085730450.1 DUF2062 domain-containing protein -
  NH234_RS22140 (NH234_22120) - 4855685..4856464 (-) 780 WP_085710947.1 ABC transporter permease -
  NH234_RS22145 (NH234_22125) - 4856461..4857393 (-) 933 WP_085710948.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22858.96 Da        Isoelectric Point: 7.3615

>NTDB_id=701566 NH234_RS22125 WP_162803506.1 4851990..4852625(-) (exbB) [Pseudomonas sp. stari2]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=701566 NH234_RS22125 WP_162803506.1 4851990..4852625(-) (exbB) [Pseudomonas sp. stari2]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCCGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACGCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCCGCCGCCCGGGTCATCCACGAGCTGGAACGCTACGT
CAATGCGCTGGGCACCATCGCCGCCATGTCGCCGTTGCTGGGGCTGCTGGGTACGGTACTGGGCATGATCGATATTTTCA
GCGCTTTCACCGGTTCCGGCATGACCACCAACGCCTCGGTGCTCGCCGGTGGTATCTCCAAGGCGCTGATCACCACTGCG
GCGGGCTTGATGGTCGGTATCCCGTCCGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCAATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844