Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NHU86_RS18745 Genome accession   NZ_CP099742
Coordinates   4022498..4023067 (+) Length   189 a.a.
NCBI ID   WP_010674212.1    Uniprot ID   A0A081LN46
Organism   Aeromonas caviae strain OT55     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4017498..4028067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHU86_RS18730 - 4018197..4018322 (+) 126 WP_005328766.1 hypothetical protein -
  NHU86_RS18735 (NHU86_18710) uvrA 4018419..4021247 (-) 2829 WP_102983679.1 excinuclease ABC subunit UvrA -
  NHU86_RS18740 (NHU86_18715) - 4021341..4021979 (-) 639 WP_162726122.1 LuxR C-terminal-related transcriptional regulator -
  NHU86_RS18745 (NHU86_18720) ssb 4022498..4023067 (+) 570 WP_010674212.1 single-stranded DNA-binding protein Machinery gene
  NHU86_RS18750 (NHU86_18725) - 4023228..4024421 (+) 1194 WP_143236977.1 site-specific integrase -
  NHU86_RS18755 (NHU86_18730) - 4024443..4025924 (+) 1482 WP_134997597.1 site-specific integrase -
  NHU86_RS18760 (NHU86_18735) - 4025921..4027984 (+) 2064 WP_337969396.1 integrase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20813.18 Da        Isoelectric Point: 5.9247

>NTDB_id=701457 NHU86_RS18745 WP_010674212.1 4022498..4023067(+) (ssb) [Aeromonas caviae strain OT55]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGGQGMGGQSSQGNWGQPQQAAPQQNMQRPAAPQQNMQPQG
GYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=701457 NHU86_RS18745 WP_010674212.1 4022498..4023067(+) (ssb) [Aeromonas caviae strain OT55]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGATACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AATGGCACCGTGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAGCTCCAGACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACCGAGGTGCTGGTCGACAGCTT
CACCGGTGTGATGCAGATGCTGGGTGGCCGTCCGCAGGGCGGTGGCCAGGGCATGGGCGGCCAATCATCCCAGGGCAACT
GGGGCCAGCCGCAACAGGCTGCACCGCAACAGAACATGCAACGTCCTGCTGCCCCGCAGCAGAACATGCAACCGCAAGGC
GGTTACGGCCGTCCGGCCCAGCAGCCGCAATCTGCCCCGCCGGTCTACAACGAACCGCCGATGGATTTCGACGACGATAT
TCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081LN46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.912

100

0.704
  ssb Glaesserella parasuis strain SC1401

54.011

98.942

0.534
  ssb Neisseria meningitidis MC58

47.34

99.471

0.471
  ssb Neisseria gonorrhoeae MS11

46.774

98.413

0.46