Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   NH461_RS10740 Genome accession   NZ_CP099734
Coordinates   2298350..2298871 (-) Length   173 a.a.
NCBI ID   WP_410000108.1    Uniprot ID   -
Organism   Photobacterium sp. TY1-4     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2293350..2303871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH461_RS10720 (NH461_10695) - 2294837..2295337 (+) 501 WP_261600342.1 response regulator -
  NH461_RS10725 (NH461_10700) - 2295414..2296409 (+) 996 WP_261600343.1 2-hydroxyacid dehydrogenase -
  NH461_RS10730 (NH461_10705) - 2296619..2297173 (+) 555 WP_261600344.1 hypothetical protein -
  NH461_RS10735 (NH461_10710) dsdC 2297326..2298231 (-) 906 WP_261600345.1 DNA-binding transcriptional regulator DsdC -
  NH461_RS10740 (NH461_10715) tfoX 2298350..2298871 (-) 522 WP_410000108.1 TfoX/Sxy family DNA transformation protein Regulator
  NH461_RS10745 (NH461_10720) - 2299230..2299829 (+) 600 WP_261600347.1 LON peptidase substrate-binding domain-containing protein -
  NH461_RS10750 (NH461_10725) - 2299935..2300858 (+) 924 WP_261600348.1 HDOD domain-containing protein -
  NH461_RS10755 (NH461_10730) - 2301042..2301941 (+) 900 WP_261600349.1 lysine exporter LysO family protein -
  NH461_RS10760 (NH461_10735) ptsG 2302014..2303441 (-) 1428 WP_261600350.1 PTS glucose transporter subunit IIBC -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19752.88 Da        Isoelectric Point: 8.6735

>NTDB_id=701402 NH461_RS10740 WP_410000108.1 2298350..2298871(-) (tfoX) [Photobacterium sp. TY1-4]
MFGGTGIFIHGAMYAILTEQSMFLRGGETLDGRLASLGCEKFKHIKRSTTAIVNYYDITYLYLQDRVLCDEIIRESIRLS
TEEKAQKSSSQGKRLRDLPNMRLTLERMVKKAGIPDVSSFVSLGAAEVYRKVRHSHGKDIDLKLLWMFAGAIEGCHWTLL
EEERKQHLLQSLE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=701402 NH461_RS10740 WP_410000108.1 2298350..2298871(-) (tfoX) [Photobacterium sp. TY1-4]
ATGTTTGGTGGTACAGGAATTTTCATCCATGGGGCCATGTACGCCATCCTGACCGAGCAGTCGATGTTTTTACGCGGCGG
TGAAACACTGGATGGCCGACTGGCCTCGCTGGGATGCGAGAAATTCAAACACATCAAGCGGAGCACAACGGCCATTGTGA
ATTACTACGATATTACGTATTTGTACCTTCAGGATCGGGTGCTGTGTGATGAGATCATTCGCGAGTCGATTCGCCTGTCT
ACAGAAGAAAAAGCCCAGAAATCCTCTTCTCAGGGGAAGCGTCTACGAGATCTGCCCAATATGCGCTTGACGCTGGAGCG
GATGGTGAAGAAAGCAGGGATCCCGGATGTCAGTAGCTTTGTTTCCCTCGGCGCTGCCGAAGTCTACCGAAAAGTCCGAC
ACTCCCACGGTAAGGACATTGACCTCAAATTGCTCTGGATGTTTGCCGGCGCGATTGAGGGCTGCCACTGGACCTTGCTT
GAAGAAGAGCGGAAACAACATTTGCTCCAGTCGCTCGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(93-171)

TfoX N-terminal domain (TfoX_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

58.96

100

0.59
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

58.96

100

0.59
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

58.96

100

0.59
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

58.96

100

0.59
  tfoX Vibrio cholerae strain A1552

58.96

100

0.59
  tfoX Vibrio parahaemolyticus RIMD 2210633

53.757

100

0.538
  tfoX Vibrio campbellii strain DS40M4

53.179

100

0.532
  tfoX Aliivibrio fischeri ES114

51.744

99.422

0.514