Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NH461_RS01570 Genome accession   NZ_CP099734
Coordinates   321396..321956 (+) Length   186 a.a.
NCBI ID   WP_261601604.1    Uniprot ID   -
Organism   Photobacterium sp. TY1-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 316396..326956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH461_RS01565 (NH461_01560) uvrA 318208..321066 (-) 2859 WP_261601603.1 excinuclease ABC subunit UvrA -
  NH461_RS01570 (NH461_01565) ssb 321396..321956 (+) 561 WP_261601604.1 single-stranded DNA-binding protein Machinery gene
  NH461_RS01575 (NH461_01570) - 322031..322912 (-) 882 WP_261601605.1 LysR family transcriptional regulator -
  NH461_RS01580 (NH461_01575) csrD 323180..325108 (+) 1929 WP_261601606.1 RNase E specificity factor CsrD -
  NH461_RS01585 (NH461_01580) - 325248..326762 (+) 1515 WP_261601607.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20468.61 Da        Isoelectric Point: 5.2156

>NTDB_id=701384 NH461_RS01570 WP_261601604.1 321396..321956(+) (ssb) [Photobacterium sp. TY1-4]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITVATSESWRDKSTGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYTTEIVVQGYNGIMQMLGGRQGGGQGMGAPMGGQQQQGGWGQPQQPAAAPQQGYAPQQSAPQH
QAPQQPQQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=701384 NH461_RS01570 WP_261601604.1 321396..321956(+) (ssb) [Photobacterium sp. TY1-4]
ATGGCCAGTCGTGGCATCAATAAAGTTATCCTGGTGGGTAACCTAGGAAATGATCCGGAAATCCGTTACATGCCGAATGG
TGGTGCAGTAGCAAATATTACCGTTGCTACTTCTGAGTCATGGCGTGACAAGAGCACCGGTGAGCAGCGTGAAAAAACTG
AATGGCACCGTGTGGCGCTGTTCGGCAAGTTAGCAGAAGTGGCTGGTGAGTACCTGCGTAAAGGCTCGCAAGTTTACATC
GAAGGCCAGCTGCAAACCCGCAAGTGGCAAGATCAGAACGGCCAGGACCGTTACACGACTGAGATCGTGGTTCAGGGTTA
CAACGGCATCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCCAGGGGATGGGCGCACCAATGGGTGGTCAGCAGCAGC
AGGGTGGTTGGGGACAACCGCAGCAACCGGCAGCCGCACCACAGCAGGGTTATGCGCCGCAGCAGTCAGCCCCGCAGCAT
CAAGCGCCGCAACAGCCACAACAGCCTCAGCAGCAGTATAACGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.401

100

0.758
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.581
  ssb Neisseria meningitidis MC58

46.196

98.925

0.457
  ssb Neisseria gonorrhoeae MS11

46.196

98.925

0.457