Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NH673_RS09635 Genome accession   NZ_CP099727
Coordinates   2154311..2154856 (+) Length   181 a.a.
NCBI ID   WP_003255446.1    Uniprot ID   I7CBQ6
Organism   Pseudomonas putida strain PCL1760     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2149311..2159856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH673_RS09620 (NH673_09620) bfr 2149406..2149870 (+) 465 WP_003255449.1 bacterioferritin -
  NH673_RS09625 (NH673_09625) uvrA 2149943..2152777 (-) 2835 WP_014589478.1 excinuclease ABC subunit UvrA -
  NH673_RS09630 (NH673_09630) - 2152907..2154301 (+) 1395 WP_019439162.1 MFS transporter -
  NH673_RS09635 (NH673_09635) ssb 2154311..2154856 (+) 546 WP_003255446.1 single-stranded DNA-binding protein Machinery gene
  NH673_RS09640 (NH673_09640) - 2154945..2156327 (-) 1383 WP_019439163.1 PLP-dependent aminotransferase family protein -
  NH673_RS09645 (NH673_09645) - 2156528..2157313 (+) 786 WP_019439164.1 TSUP family transporter -
  NH673_RS09650 (NH673_09650) - 2157335..2158096 (+) 762 WP_019439165.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20059.16 Da        Isoelectric Point: 5.9286

>NTDB_id=701347 NH673_RS09635 WP_003255446.1 2154311..2154856(+) (ssb) [Pseudomonas putida strain PCL1760]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=701347 NH673_RS09635 WP_003255446.1 2154311..2154856(+) (ssb) [Pseudomonas putida strain PCL1760]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAAGGCCAGCAGCAGGGCGGCGACCCGTACAATCAGGGTGGCGGCAATTATGGTG
GTGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I7CBQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.575
  ssb Glaesserella parasuis strain SC1401

47.12

100

0.497
  ssb Neisseria meningitidis MC58

48.634

100

0.492
  ssb Neisseria gonorrhoeae MS11

48.634

100

0.492