Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NHF51_RS18555 Genome accession   NZ_CP099717
Coordinates   4048798..4049379 (+) Length   193 a.a.
NCBI ID   WP_218330020.1    Uniprot ID   -
Organism   Aeromonas encheleia strain SOD01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4043798..4054379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHF51_RS18545 (NHF51_18545) uvrA 4044718..4047546 (-) 2829 WP_252995163.1 excinuclease ABC subunit UvrA -
  NHF51_RS18550 (NHF51_18550) - 4047642..4048280 (-) 639 WP_252996449.1 LuxR C-terminal-related transcriptional regulator -
  NHF51_RS18555 (NHF51_18555) ssb 4048798..4049379 (+) 582 WP_218330020.1 single-stranded DNA-binding protein Machinery gene
  NHF51_RS18560 (NHF51_18560) - 4049548..4050318 (+) 771 WP_252995164.1 ABC transporter substrate-binding protein -
  NHF51_RS20470 - 4050367..4050489 (-) 123 WP_126623417.1 hypothetical protein -
  NHF51_RS18565 (NHF51_18565) yjbD 4051035..4051319 (+) 285 WP_042653393.1 DUF3811 domain-containing protein -
  NHF51_RS18570 (NHF51_18570) cspA 4051718..4051930 (+) 213 WP_025328559.1 RNA chaperone/antiterminator CspA -
  NHF51_RS18575 (NHF51_18575) - 4052211..4053596 (-) 1386 WP_252996450.1 ATP-binding protein -
  NHF51_RS18580 (NHF51_18580) - 4053607..4054329 (-) 723 WP_218292710.1 response regulator -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21339.73 Da        Isoelectric Point: 5.9301

>NTDB_id=701306 NHF51_RS18555 WP_218330020.1 4048798..4049379(+) (ssb) [Aeromonas encheleia strain SOD01]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSESWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQGGQERYTTEILVDSFSGVMQMLGGRPQGGAGQSMGGQQSQGNWGQPQQAAPQQNMPRPAAAPQQNMQQ
QGGYSRPQQQQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=701306 NHF51_RS18555 WP_218330020.1 4048798..4049379(+) (ssb) [Aeromonas encheleia strain SOD01]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGTGG
CGGTGCCGTGACCAACATCACCCTGGCCACCTCCGAATCCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACTG
AATGGCACCGTGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAAAAAGGCTCCCAGGTCTATGTC
GAAGGCAAACTGCAGACTCGCAAGTGGCAGGATCAGGGTGGTCAGGAACGTTACACCACCGAAATCCTGGTCGACAGCTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGCGCCGGTCAGAGCATGGGTGGCCAACAATCCCAGGGCA
ACTGGGGTCAGCCGCAACAGGCCGCTCCCCAGCAGAACATGCCGCGCCCCGCTGCCGCACCGCAGCAAAATATGCAGCAG
CAAGGCGGTTACAGCCGTCCTCAGCAACAGCAGCAACCTCAGTCTGCCCCGCCGGTTTACAACGAACCGCCGATGGATTT
CGACGACGACATTCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.347

100

0.684
  ssb Glaesserella parasuis strain SC1401

52.736

100

0.549
  ssb Neisseria meningitidis MC58

46.114

100

0.461
  ssb Neisseria gonorrhoeae MS11

46.316

98.446

0.456