Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NF674_RS23370 Genome accession   NZ_CP099610
Coordinates   5272066..5272587 (-) Length   173 a.a.
NCBI ID   WP_042610650.1    Uniprot ID   A0A1H1Q0A8
Organism   Pseudomonas moraviensis strain OTU5VILLAA1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5267066..5277587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF674_RS23340 (NF674_23340) - 5267392..5267973 (+) 582 WP_252875189.1 YjfI family protein -
  NF674_RS23345 (NF674_23345) - 5267991..5268689 (+) 699 WP_042610646.1 PspA/IM30 family protein -
  NF674_RS23350 (NF674_23350) - 5268902..5269552 (+) 651 WP_252875190.1 DUF2491 family protein -
  NF674_RS23355 (NF674_23355) - 5269568..5269993 (+) 426 WP_227973169.1 DUF350 domain-containing protein -
  NF674_RS23360 (NF674_23360) - 5270012..5270710 (+) 699 WP_252875191.1 DUF1190 domain-containing protein -
  NF674_RS23365 (NF674_23365) - 5270712..5271869 (+) 1158 WP_252875192.1 glutathionylspermidine synthase family protein -
  NF674_RS23370 (NF674_23370) ssb 5272066..5272587 (-) 522 WP_042610650.1 single-stranded DNA-binding protein Machinery gene
  NF674_RS23375 (NF674_23375) - 5272597..5273994 (-) 1398 WP_252875193.1 MFS transporter -
  NF674_RS23380 (NF674_23380) uvrA 5274186..5277020 (+) 2835 WP_042610652.1 excinuclease ABC subunit UvrA -
  NF674_RS23385 (NF674_23385) bfr 5277087..5277554 (-) 468 WP_042610653.1 bacterioferritin -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19212.36 Da        Isoelectric Point: 5.9314

>NTDB_id=701115 NF674_RS23370 WP_042610650.1 5272066..5272587(-) (ssb) [Pseudomonas moraviensis strain OTU5VILLAA1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRSAPPAPQQAAPQP
APDFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=701115 NF674_RS23370 WP_042610650.1 5272066..5272587(-) (ssb) [Pseudomonas moraviensis strain OTU5VILLAA1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGTCAGAAGGTCGAAAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAGCAAGGCGGCGGCAACAATTACCAGCAGCAGGCGCCACGTC
AGCAGGCCCCACGCCCGCAGCAGTCGGCTCCGCAGCAGCGTTCGGCTCCACCAGCGCCGCAGCAGGCCGCACCGCAACCG
GCTCCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H1Q0A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.923

100

0.613
  ssb Neisseria meningitidis MC58

48.066

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.503
  ssb Glaesserella parasuis strain SC1401

47.514

100

0.497