Detailed information NTG0701111

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NF674_RS22155
• Genome accession: NZ_CP099610
• Coordinates: 5009639..5010511 (+)
• Length: 290 a.a.
• NCBI ID: WP_252875097.1
• Uniprot ID: -
• Organism: Pseudomonas moraviensis strain OTU5VILLAA1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5004639..5015511

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NF674_RS22130 (NF674_22130)	-	5004833..5005132 (+)	300	WP_064364128.1	DUF2845 domain-containing protein	-
NF674_RS22135 (NF674_22135)	-	5005400..5005753 (-)	354	WP_042610476.1	BON domain-containing protein	-
NF674_RS22140 (NF674_22140)	-	5006053..5006490 (-)	438	WP_064364126.1	pilin	-
NF674_RS22145 (NF674_22145)	pilB	5006717..5008417 (+)	1701	WP_042610478.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NF674_RS22150 (NF674_22150)	pilC	5008420..5009637 (+)	1218	WP_252875096.1	type II secretion system F family protein	Machinery gene
NF674_RS22155 (NF674_22155)	pilD	5009639..5010511 (+)	873	WP_252875097.1	A24 family peptidase	Machinery gene
NF674_RS22160 (NF674_22160)	coaE	5010508..5011131 (+)	624	WP_252875098.1	dephospho-CoA kinase	-
NF674_RS22165 (NF674_22165)	yacG	5011128..5011328 (+)	201	WP_042610482.1	DNA gyrase inhibitor YacG	-
NF674_RS22170 (NF674_22170)	-	5011378..5012067 (-)	690	WP_252875099.1	energy-coupling factor ABC transporter permease	-
NF674_RS22175 (NF674_22175)	-	5012257..5012883 (+)	627	WP_007909887.1	DUF1780 domain-containing protein	-
NF674_RS22180 (NF674_22180)	-	5012880..5013407 (+)	528	WP_065615663.1	MOSC domain-containing protein	-
NF674_RS22185 (NF674_22185)	-	5013459..5013632 (+)	174	WP_007909875.1	DUF3094 domain-containing protein	-
NF674_RS22190 (NF674_22190)	-	5013696..5014994 (+)	1299	WP_016773144.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32000.23 Da
• Isoelectric Point: 7.3656

>NTDB_id=701111 NF674_RS22155 WP_252875097.1 5009639..5010511(+) (pilD) [Pseudomonas moraviensis strain OTU5VILLAA1]
MPIDELFAVYPLAFVLTALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPIETPAPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLVLRGRCSACSAPISRRYPLTELACGLLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPMLWLGLIVNSFGVFVPLSDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQVLPLTILLSSLVG
AVFGVLMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=701111 NF674_RS22155 WP_252875097.1 5009639..5010511(+) (pilD) [Pseudomonas moraviensis strain OTU5VILLAA1]
ATGCCTATCGACGAACTGTTTGCCGTGTACCCGCTGGCCTTTGTGCTCACCGCGCTGCTGCTTGGTCTGGTGGTCGGCAG
CTTCCTCAACGTGGTGGTCTGGCGTCTGCCGAAAATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCCATCGAAACGCCTGCGCCGACCTACAACCTGATGCTGCCGCATTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAATATTCCGCTGCTCAGTTATCTGGTGCTGCGCGGGCGCTGCTCGGCCTGCTCGGCACCGATCAGCAGACG
TTACCCGCTGACCGAGCTGGCCTGCGGCCTGCTCTCGGCGTTCATCGCCTGGCACCTTGGCTTCGGCTGGCCGGCGGGTT
TGCTGATCTTGCTGACGTGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAGCATCAACTGCTGCCCGATGTGCTGGTG
CTACCGATGTTGTGGCTGGGGCTGATCGTCAATAGCTTCGGCGTATTCGTGCCGTTGTCCGATGCGCTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGTTACTCACCGGCAAGGACGGCATCGGCCATGGCGATT
TCAAGCTGCTGGCCTTGCTCGGTGCATGGGGTGGCTGGCAGGTTCTGCCCCTGACCATTCTGTTGTCATCGCTGGTGGGG
GCGGTTTTCGGCGTGCTGATGCTGCGTCTGCGCGCCCAGGAAACCTCGACGCCAATCCCGTTCGGGCCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.225	97.931	0.531
pilD	Vibrio campbellii strain DS40M4	52.281	98.276	0.514
pilD	Neisseria gonorrhoeae MS11	45.993	98.966	0.455
pilD	Acinetobacter baumannii D1279779	46.715	94.483	0.441
pilD	Acinetobacter nosocomialis M2	46.715	94.483	0.441