Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NF672_RS23480 Genome accession   NZ_CP099608
Coordinates   5288290..5288811 (-) Length   173 a.a.
NCBI ID   WP_042610650.1    Uniprot ID   A0A1H1Q0A8
Organism   Pseudomonas moraviensis strain OTU5BARRA1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5283290..5293811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF672_RS23450 (NF672_23450) - 5283528..5284196 (+) 669 WP_116658407.1 YjfI family protein -
  NF672_RS23455 (NF672_23455) - 5284214..5284912 (+) 699 WP_042610646.1 PspA/IM30 family protein -
  NF672_RS23460 (NF672_23460) - 5285125..5285775 (+) 651 WP_042610647.1 DUF2491 family protein -
  NF672_RS23465 (NF672_23465) - 5285791..5286216 (+) 426 WP_064363996.1 DUF350 domain-containing protein -
  NF672_RS23470 (NF672_23470) - 5286235..5286933 (+) 699 WP_064363995.1 DUF1190 domain-containing protein -
  NF672_RS23475 (NF672_23475) - 5286935..5288092 (+) 1158 WP_065615576.1 glutathionylspermidine synthase family protein -
  NF672_RS23480 (NF672_23480) ssb 5288290..5288811 (-) 522 WP_042610650.1 single-stranded DNA-binding protein Machinery gene
  NF672_RS23485 (NF672_23485) - 5288821..5290218 (-) 1398 WP_065615575.1 MFS transporter -
  NF672_RS23490 (NF672_23490) uvrA 5290410..5293244 (+) 2835 WP_042610652.1 excinuclease ABC subunit UvrA -
  NF672_RS23495 (NF672_23495) bfr 5293310..5293777 (-) 468 WP_042610653.1 bacterioferritin -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19212.36 Da        Isoelectric Point: 5.9314

>NTDB_id=701057 NF672_RS23480 WP_042610650.1 5288290..5288811(-) (ssb) [Pseudomonas moraviensis strain OTU5BARRA1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRSAPPAPQQAAPQP
APDFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=701057 NF672_RS23480 WP_042610650.1 5288290..5288811(-) (ssb) [Pseudomonas moraviensis strain OTU5BARRA1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGTCAGAAGGTCGAAAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAGCAAGGCGGCGGCAACAATTACCAGCAGCAGGCGCCACGTC
AGCAGGCCCCACGCCCGCAGCAGTCGGCTCCGCAGCAGCGTTCGGCTCCACCAGCGCCGCAGCAGGCCGCACCGCAACCG
GCTCCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H1Q0A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.923

100

0.613
  ssb Neisseria meningitidis MC58

48.066

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.503
  ssb Glaesserella parasuis strain SC1401

47.514

100

0.497