Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NF680_RS23350 Genome accession   NZ_CP099602
Coordinates   5219903..5220424 (-) Length   173 a.a.
NCBI ID   WP_041477666.1    Uniprot ID   A0A5E7PLF6
Organism   Pseudomonas siliginis strain OTU6MONTID1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5214903..5225424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF680_RS23320 (NF680_23320) - 5215148..5215816 (+) 669 WP_041477671.1 YjfI family protein -
  NF680_RS23325 (NF680_23325) - 5215834..5216532 (+) 699 WP_041477670.1 PspA/IM30 family protein -
  NF680_RS23330 (NF680_23330) - 5216741..5217391 (+) 651 WP_252876985.1 DUF2491 family protein -
  NF680_RS23335 (NF680_23335) - 5217407..5217832 (+) 426 WP_016772952.1 DUF350 domain-containing protein -
  NF680_RS23340 (NF680_23340) - 5217851..5218549 (+) 699 WP_056790788.1 DUF1190 domain-containing protein -
  NF680_RS23345 (NF680_23345) - 5218551..5219708 (+) 1158 WP_252876986.1 glutathionylspermidine synthase family protein -
  NF680_RS23350 (NF680_23350) ssb 5219903..5220424 (-) 522 WP_041477666.1 single-stranded DNA-binding protein Machinery gene
  NF680_RS23355 (NF680_23355) - 5220434..5221831 (-) 1398 WP_252876987.1 MFS transporter -
  NF680_RS23360 (NF680_23360) uvrA 5222023..5224857 (+) 2835 WP_041477664.1 excinuclease ABC subunit UvrA -
  NF680_RS23365 (NF680_23365) bfr 5224923..5225390 (-) 468 WP_130912285.1 bacterioferritin -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19243.38 Da        Isoelectric Point: 5.9314

>NTDB_id=701028 NF680_RS23350 WP_041477666.1 5219903..5220424(-) (ssb) [Pseudomonas siliginis strain OTU6MONTID1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRSAPQAPQQAAPQP
APDFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=701028 NF680_RS23350 WP_041477666.1 5219903..5220424(-) (ssb) [Pseudomonas siliginis strain OTU6MONTID1]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
TGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAAACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAGCAAGGCGGCGGCAACAACTACCAGCAGCAGGCGCCACGTC
AGCAGGCACCGCGCCCGCAGCAGTCGGCTCCACAGCAGCGTTCGGCTCCGCAAGCACCGCAGCAGGCCGCACCGCAACCG
GCTCCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E7PLF6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.47

100

0.618
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.503
  ssb Neisseria meningitidis MC58

48.066

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.503