Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NF680_RS22325 Genome accession   NZ_CP099602
Coordinates   5001780..5003126 (+) Length   448 a.a.
NCBI ID   WP_252876919.1    Uniprot ID   -
Organism   Pseudomonas siliginis strain OTU6MONTID1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4996780..5008126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF680_RS22300 (NF680_22300) pgeF 4996994..4997716 (-) 723 WP_252876917.1 peptidoglycan editing factor PgeF -
  NF680_RS22305 (NF680_22305) rluD 4997713..4998675 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NF680_RS22310 (NF680_22310) - 4998827..4999843 (+) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  NF680_RS22315 (NF680_22315) - 4999971..5000204 (+) 234 WP_252868302.1 PP0621 family protein -
  NF680_RS22320 (NF680_22320) pilS 5000194..5001783 (+) 1590 WP_252876918.1 ATP-binding protein Regulator
  NF680_RS22325 (NF680_22325) pilR 5001780..5003126 (+) 1347 WP_252876919.1 sigma-54 dependent transcriptional regulator Regulator
  NF680_RS22330 (NF680_22330) thiO 5003219..5004319 (-) 1101 WP_252876920.1 glycine oxidase ThiO -
  NF680_RS22335 (NF680_22335) - 5004377..5004778 (-) 402 WP_252868305.1 type IV pilin protein -
  NF680_RS22340 (NF680_22340) - 5004794..5007883 (-) 3090 WP_252876921.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50170.44 Da        Isoelectric Point: 6.2623

>NTDB_id=701026 NF680_RS22325 WP_252876919.1 5001780..5003126(+) (pilR) [Pseudomonas siliginis strain OTU6MONTID1]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPNLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSQPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQVDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=701026 NF680_RS22325 WP_252876919.1 5001780..5003126(+) (pilR) [Pseudomonas siliginis strain OTU6MONTID1]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAGGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTCGTGCAACACATTCAGCAACGCGATCCAAACCTGCCG
GTGGCGATGATCACTGCGTACGGAAGCCTGGAAACGGCCATCAATGCATTGAAGGCCGGGGCGTTCGATTTCCTCACCAA
ACCGGTGGAGCTGCCGCGATTGCGCGAACTGGTCAGCTCGGCGCTGCGCCTGCCGACAGCGGGCGGCCTGAGCACGGCAA
TCGAGCGACGGTTGCTGGGCGACTCGCAGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCGCGCAGCCAGGCG
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCACGTCTGATTCACGAACAAGGCCCGCGCGCCAG
CCAGCCGTTTGTGCCGGTGAACTGCGGGGCAATTCCGTCGGAACTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GCTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTATTCCAGGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GACCTGCCGCTGTCGATGCAGGTAAAACTGCTGCGAGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTGCGTATCCTTTGCGCCACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGCGTGCCGTCCCTGCGCGAACGCCGCGACGACATCGAGGCGCTTGCC
ATGCACGTGCTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCATCCGCAAGCGCTCGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAATGTGCGCGAACTGGAGAATGTTCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGACGGGGCGATGGCCGATCTGACGCAGGTCGACAAT
CTTGAGGATTATCTGGAGAGCGTCGAGAGGAAGCTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTCAGGTCGATGCGTTATCGGCTGAAGAAATTGGGACTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.878

98.884

0.77
  pilR Acinetobacter baumannii strain A118

49.673

100

0.509
  luxO Vibrio cholerae strain A1552

40.342

91.295

0.368