Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NF680_RS22320 Genome accession   NZ_CP099602
Coordinates   5000194..5001783 (+) Length   529 a.a.
NCBI ID   WP_252876918.1    Uniprot ID   -
Organism   Pseudomonas siliginis strain OTU6MONTID1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4995194..5006783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF680_RS22300 (NF680_22300) pgeF 4996994..4997716 (-) 723 WP_252876917.1 peptidoglycan editing factor PgeF -
  NF680_RS22305 (NF680_22305) rluD 4997713..4998675 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NF680_RS22310 (NF680_22310) - 4998827..4999843 (+) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  NF680_RS22315 (NF680_22315) - 4999971..5000204 (+) 234 WP_252868302.1 PP0621 family protein -
  NF680_RS22320 (NF680_22320) pilS 5000194..5001783 (+) 1590 WP_252876918.1 ATP-binding protein Regulator
  NF680_RS22325 (NF680_22325) pilR 5001780..5003126 (+) 1347 WP_252876919.1 sigma-54 dependent transcriptional regulator Regulator
  NF680_RS22330 (NF680_22330) thiO 5003219..5004319 (-) 1101 WP_252876920.1 glycine oxidase ThiO -
  NF680_RS22335 (NF680_22335) - 5004377..5004778 (-) 402 WP_252868305.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58612.28 Da        Isoelectric Point: 6.8632

>NTDB_id=701025 NF680_RS22320 WP_252876918.1 5000194..5001783(+) (pilS) [Pseudomonas siliginis strain OTU6MONTID1]
MVAEAVNADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHLID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGETREQANER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQADVWLALFVDPDSQLAVLEVQDNGPGVSADEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=701025 NF680_RS22320 WP_252876918.1 5000194..5001783(+) (pilS) [Pseudomonas siliginis strain OTU6MONTID1]
GTGGTCGCTGAGGCCGTCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTGTACCGTTTAAGTGT
CGGCATCACTCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GTGGCAGCTGGCTGTACCTGATCATCAATATGCTGCTGGTGGTGTTCCTCGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCACTTGTCGATGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCCGGCGGCGTGGCCAGTGCGCTGGGCAATCT
GCTGGTGGTCTCGGTGGCGATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATTGCCGCCATCGCGGCGATCG
GCATTGTCGGCCTGAGCTTTCTGCTGGGTCTCAGCCGCCCCTTGAGCGCCAACGCCTACTTGCAAGCCGGCACCCTCGGT
GCGCTGTGCTTTGCCGCATCGCTGCTGGTGCAAGGGTTGATCCGCCGCCTCGAAGTCAGCGAGACCCTGGCCGAACAGCG
CGCCAGCGAGGTGGTCAGCCTGGAGGCGCTGAACGCGTTGATCCTGCAACGCATGCGCACGGGGATTCTGGTGCTCGACG
AACAACGCCGGGTGCAACTGGCCAATCACAGTGCGCAGAGTCTGCTCGGCCATAGTCACCTGCAAGGTCATCTGATCGAC
GAATATTCGCCAGCGCTGGTCGAGCGCCTGCAATTGTGGCGTAACAATCCGACCTTGCGCCCGCAGAGCCTGAAAATTCC
CGGCAATGGCCTTGAGCTGCAACCCAGCTTCATCGCTCTCGAGCAGAGTCCGAACCAGCAGACGCTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAAGCACAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCACTGGGCGCGATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGACG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGTCGCCAGC
AAAGCGCGCCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAACCCGCGAGCAGGCCAACGAACGC
CAGCACATTCATCTGCGAATCAATTCCGGCGATTTCACCACACTGATGGACCCCAACCAGCTGCGGCAGATTCTCGACAA
TCTGATCCGCAACGCCTGGCGTCACAGTGCCCAACTGCACGAGCAGGCCGACGTCTGGCTGGCACTGTTCGTCGACCCCG
ACAGCCAATTGGCAGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGATGAACAGGCGCATCTGTTTGAGCCG
TTCTTCACTACGAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.623

100

0.597