Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NF680_RS01890 Genome accession   NZ_CP099602
Coordinates   435531..436595 (+) Length   354 a.a.
NCBI ID   WP_252877285.1    Uniprot ID   -
Organism   Pseudomonas siliginis strain OTU6MONTID1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 430531..441595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF680_RS01880 (NF680_01880) - 431278..432546 (+) 1269 WP_016772053.1 malic enzyme-like NAD(P)-binding protein -
  NF680_RS01885 (NF680_01885) - 432867..435314 (-) 2448 WP_095181031.1 penicillin-binding protein 1A -
  NF680_RS01890 (NF680_01890) comM 435531..436595 (+) 1065 WP_252877285.1 pilus assembly protein PilM Machinery gene
  NF680_RS01895 (NF680_01895) - 436595..437161 (+) 567 WP_056787334.1 PilN domain-containing protein -
  NF680_RS01900 (NF680_01900) pilO 437158..437781 (+) 624 WP_041477570.1 type 4a pilus biogenesis protein PilO -
  NF680_RS01905 (NF680_01905) - 437778..438302 (+) 525 WP_056787340.1 pilus assembly protein PilP -
  NF680_RS01910 (NF680_01910) pilQ 438316..440394 (+) 2079 WP_150638039.1 type IV pilus secretin PilQ Machinery gene
  NF680_RS01915 (NF680_01915) aroK 440399..440917 (+) 519 WP_024011270.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38032.48 Da        Isoelectric Point: 4.6270

>NTDB_id=701007 NF680_RS01890 WP_252877285.1 435531..436595(+) (comM) [Pseudomonas siliginis strain OTU6MONTID1]
MLGLFNKKTNALLGIDISSTSVKLLELSRQGERYRVEAYAVEPLPANAVVEKNIADLEGVGQALSRLLVKARTGVKSVAV
AVAGSAVITKVIEMDAGLSDDELENQLKIEADQYIPYPLDEVAIDFEVQGVSPRNPDRVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATHLAASQERLTVAVVDIGATMTTLSVLHNGKIIYTREQLFGGRQLTEEIQRRYGLTV
EQAGLAKKQGGLPDDYLSEVLQPFREALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVPGLDRLIEQRLDTPTQVANP
FADMALGSEVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=701007 NF680_RS01890 WP_252877285.1 435531..436595(+) (comM) [Pseudomonas siliginis strain OTU6MONTID1]
GTGCTGGGACTCTTCAATAAAAAGACCAATGCGTTACTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTGCTGGAACT
GAGCCGTCAGGGCGAGCGCTACCGGGTCGAGGCCTATGCGGTGGAGCCGTTGCCGGCGAACGCCGTGGTCGAAAAGAACA
TCGCCGACCTCGAAGGCGTCGGCCAGGCGCTGAGCCGGTTGCTGGTGAAAGCGCGAACCGGGGTCAAGAGCGTGGCGGTG
GCGGTGGCCGGTTCTGCGGTGATCACCAAGGTCATCGAGATGGACGCCGGGCTGTCTGACGACGAACTGGAAAACCAGCT
CAAGATCGAGGCCGACCAATACATTCCCTATCCGCTGGACGAAGTCGCCATCGATTTTGAAGTCCAGGGCGTCTCGCCGC
GCAACCCGGATCGGGTCAACGTGCTGCTTGCCGCCTGTCGCAAGGAAAACGTCGAGGTGCGTGAAGCGGCGCTGGCGCTC
GCCGGCCTGACCGCGCGGGTGGTGGACGTCGAGGCCTACGCCCTCGAGCGCTCGTTCGGTCTGCTGGCGACGCATCTGGC
GGCCTCCCAGGAGCGCCTGACCGTGGCGGTGGTCGACATCGGTGCGACCATGACCACTCTCAGCGTCCTGCACAACGGCA
AGATCATCTATACCCGAGAGCAATTGTTCGGCGGACGCCAGCTCACCGAAGAGATCCAGCGCCGCTACGGCCTCACGGTC
GAACAGGCGGGCCTGGCGAAAAAACAGGGCGGGCTGCCTGACGATTACCTCAGCGAGGTCTTGCAGCCATTTCGCGAGGC
GCTGGTGCAGCAAGTCTCGCGTTCGCTGCAGTTCTTCTTCGCCTCCGGGCAGTACAACGCGGTCGACCATATCCTGTTGG
CCGGCGGCACCGCCTCGGTGCCCGGCCTGGACCGTCTGATCGAACAGCGGCTGGACACGCCGACGCAGGTCGCCAACCCA
TTCGCCGACATGGCCTTGGGCAGCGAGGTCAACGCAGGAGCGCTGGCCAGCGACGCGCCAGCCTTGATGATTGCCTGCGG
GCTCGCGCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.215

100

0.562
  pilM Acinetobacter baumannii D1279779

56.215

100

0.562
  comM Acinetobacter baylyi ADP1

54.52

100

0.545
  pilM Legionella pneumophila strain ERS1305867

48.305

100

0.483