Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NF678_RS22135 Genome accession   NZ_CP099600
Coordinates   5002838..5004184 (+) Length   448 a.a.
NCBI ID   WP_024014351.1    Uniprot ID   V8R2K7
Organism   Pseudomonas siliginis strain OTU6MEDAA1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4997838..5009184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF678_RS22110 (NF678_22110) pgeF 4998052..4998774 (-) 723 WP_150638502.1 peptidoglycan editing factor PgeF -
  NF678_RS22115 (NF678_22115) rluD 4998771..4999733 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NF678_RS22120 (NF678_22120) - 4999885..5000901 (+) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  NF678_RS22125 (NF678_22125) - 5001029..5001262 (+) 234 WP_016773138.1 PP0621 family protein -
  NF678_RS22130 (NF678_22130) pilS 5001252..5002841 (+) 1590 WP_252882701.1 ATP-binding protein Regulator
  NF678_RS22135 (NF678_22135) pilR 5002838..5004184 (+) 1347 WP_024014351.1 sigma-54 dependent transcriptional regulator Regulator
  NF678_RS22140 (NF678_22140) thiO 5004277..5005377 (-) 1101 WP_252882702.1 glycine oxidase ThiO -
  NF678_RS22145 (NF678_22145) - 5005435..5005836 (-) 402 WP_252882703.1 type IV pilin protein -
  NF678_RS22150 (NF678_22150) - 5005852..5008941 (-) 3090 WP_252882704.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50162.46 Da        Isoelectric Point: 6.3600

>NTDB_id=700967 NF678_RS22135 WP_024014351.1 5002838..5004184(+) (pilR) [Pseudomonas siliginis strain OTU6MEDAA1]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQVDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=700967 NF678_RS22135 WP_024014351.1 5002838..5004184(+) (pilR) [Pseudomonas siliginis strain OTU6MEDAA1]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAGGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGATCCACACCTGCCG
GTGGCGATGATCACTGCGTACGGAAGCCTGGAAACGGCCATCAATGCATTGAAGGCCGGGGCGTTCGATTTCCTCACCAA
ACCGGTGGAGCTGCCGCGATTGCGCGAACTGGTCAGCTCGGCGCTGCGCCTGCCGACAGCGGGCGGCTTGAGCACGGCAA
TCGAGCGACGCTTGCTGGGCGATTCGCCGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCACGCAGTCAGGCG
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCGCGTCTGATTCACGAACAAGGCCCGCGCGCCAG
CCAGCCGTTTGTGCCGGTGAACTGCGGGGCAATTCCGTCGGAACTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GCTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTATTCCAGGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GATCTGCCACTGTCGATGCAAGTGAAACTGCTGCGGGCAATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTGCGTATCCTTTGCGCCACGCACAAAGACCTTGAAGCCGAAGTTTCAGCCGAGCGTTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGCGTGCCGTCCCTGCGCGAACGCCGCGACGACATCGAGGCGCTTGCC
ATGCACGTGCTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCATCCGCAAGCGCTCGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAATGTGCGCGAACTGGAGAATGTTCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGACGGGGCGATGGCCGATCTGACGCAGGTCGACAAT
CTTGAGGATTATCTGGAGAGCGTCGAGAGGAAGCTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTCAGGTCGATGCGTTATCGGCTGAAGAAATTGGGACTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8R2K7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

98.884

0.772
  pilR Acinetobacter baumannii strain A118

49.455

100

0.507
  luxO Vibrio cholerae strain A1552

40.098

91.295

0.366