Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NF678_RS22130 Genome accession   NZ_CP099600
Coordinates   5001252..5002841 (+) Length   529 a.a.
NCBI ID   WP_252882701.1    Uniprot ID   -
Organism   Pseudomonas siliginis strain OTU6MEDAA1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4996252..5007841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF678_RS22110 (NF678_22110) pgeF 4998052..4998774 (-) 723 WP_150638502.1 peptidoglycan editing factor PgeF -
  NF678_RS22115 (NF678_22115) rluD 4998771..4999733 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NF678_RS22120 (NF678_22120) - 4999885..5000901 (+) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  NF678_RS22125 (NF678_22125) - 5001029..5001262 (+) 234 WP_016773138.1 PP0621 family protein -
  NF678_RS22130 (NF678_22130) pilS 5001252..5002841 (+) 1590 WP_252882701.1 ATP-binding protein Regulator
  NF678_RS22135 (NF678_22135) pilR 5002838..5004184 (+) 1347 WP_024014351.1 sigma-54 dependent transcriptional regulator Regulator
  NF678_RS22140 (NF678_22140) thiO 5004277..5005377 (-) 1101 WP_252882702.1 glycine oxidase ThiO -
  NF678_RS22145 (NF678_22145) - 5005435..5005836 (-) 402 WP_252882703.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58653.38 Da        Isoelectric Point: 7.0024

>NTDB_id=700966 NF678_RS22130 WP_252882701.1 5001252..5002841(+) (pilS) [Pseudomonas siliginis strain OTU6MEDAA1]
MVAEAVNADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHLID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGETREQANER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQAEVWLALFVDPDSQLAVLEVQDNGPGVSADEQAHLFEP
FFTKSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=700966 NF678_RS22130 WP_252882701.1 5001252..5002841(+) (pilS) [Pseudomonas siliginis strain OTU6MEDAA1]
GTGGTCGCTGAGGCCGTCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTGTACCGTTTAAGTGT
CGGCATCACTCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GTGGCAGCTGGCTGTACCTGATCATCAATATGCTGTTGGTGGTGTTCCTCGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCCCTCGTCGACGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCCGGCGGCGTGGCCAGTGCGCTGGGCAATCT
GCTGGTGGTCTCGGTGGCAATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATTGCCGCCATCGCGGCGATCG
GCATTGTCGGCCTGAGTTTTCTGCTGGGGCTCAGCCGCCCCTTGAGCGCCAACGCGTACCTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTCGCCGCCTCACTGCTGGTGCAAGGGCTGATCCGCCGCCTCGAAGTCAGCGAGACCCTGGCCGAACAGCG
CGCCAGCGAGGTGGTCAGCCTGGAGGCGTTGAATGCGTTGATCCTGCAACGCATGCGCACGGGGATTCTGGTGCTCGACG
AGCAACGCCGGGTGCAACTGGCCAATCACAGTGCGCAGAGTCTGCTCGGCCATAGTCACCTGCAAGGTCATTTGATCGAC
GAATATTCGCCAGCACTGGTCGAGCGCCTGCAATTGTGGCGTAACAATCCGACCTTGCGCCCGCAGAGCCTGAAAATTCC
CGGCAATGGCCTTGAGCTGCAACCCAGCTTCATCGCTCTCGAGCAGAGTCCGAACCAGCAGACGCTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAAGCCCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCACTGGGCGCGATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGACG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGACTGGACCTCAAGCCGTGGCTGGAAGATTTCGTCGGCGAGACCCGCGAGCAGGCCAATGAGCGC
CAGCACATTCATCTGCGAATCAATTCCGGCGATTTCACCACACTGATGGACCCCAACCAGCTGCGGCAGATTCTCGACAA
TCTGATCCGCAACGCCTGGCGTCACAGTGCCCAACTGCACGAGCAGGCCGAAGTATGGCTGGCACTGTTCGTCGACCCCG
ACAGCCAATTGGCAGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGATGAACAGGCGCATCTGTTTGAGCCG
TTCTTCACTAAGAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.434

100

0.595