Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | NF678_RS22035 | Genome accession | NZ_CP099600 |
| Coordinates | 4987049..4987921 (+) | Length | 290 a.a. |
| NCBI ID | WP_252878912.1 | Uniprot ID | - |
| Organism | Pseudomonas siliginis strain OTU6MEDAA1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4982049..4992921
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NF678_RS22010 (NF678_22010) | - | 4982265..4982564 (+) | 300 | WP_150742242.1 | DUF2845 domain-containing protein | - |
| NF678_RS22015 (NF678_22015) | - | 4982829..4983182 (-) | 354 | WP_071173629.1 | BON domain-containing protein | - |
| NF678_RS22020 (NF678_22020) | pilA/pilAI | 4983478..4983900 (-) | 423 | WP_252876912.1 | pilin | Machinery gene |
| NF678_RS22025 (NF678_22025) | pilB | 4984127..4985827 (+) | 1701 | WP_056790439.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| NF678_RS22030 (NF678_22030) | pilC | 4985830..4987047 (+) | 1218 | WP_252876913.1 | type II secretion system F family protein | Machinery gene |
| NF678_RS22035 (NF678_22035) | pilD | 4987049..4987921 (+) | 873 | WP_252878912.1 | A24 family peptidase | Machinery gene |
| NF678_RS22040 (NF678_22040) | coaE | 4987918..4988541 (+) | 624 | WP_252882697.1 | dephospho-CoA kinase | - |
| NF678_RS22045 (NF678_22045) | yacG | 4988538..4988738 (+) | 201 | WP_016773149.1 | DNA gyrase inhibitor YacG | - |
| NF678_RS22050 (NF678_22050) | - | 4988746..4988961 (-) | 216 | WP_016773148.1 | hypothetical protein | - |
| NF678_RS22055 (NF678_22055) | - | 4989027..4989716 (-) | 690 | WP_252882698.1 | energy-coupling factor ABC transporter permease | - |
| NF678_RS22060 (NF678_22060) | - | 4989907..4990533 (+) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| NF678_RS22065 (NF678_22065) | - | 4990530..4991057 (+) | 528 | WP_252882699.1 | MOSC domain-containing protein | - |
| NF678_RS22070 (NF678_22070) | - | 4991109..4991282 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| NF678_RS22075 (NF678_22075) | - | 4991349..4992647 (+) | 1299 | WP_252882700.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31965.17 Da Isoelectric Point: 7.3655
>NTDB_id=700965 NF678_RS22035 WP_252878912.1 4987049..4987921(+) (pilD) [Pseudomonas siliginis strain OTU6MEDAA1]
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLWLRGRCSGCSAPISKRYPLTELACGVLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLWLRGRCSGCSAPISKRYPLTELACGVLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=700965 NF678_RS22035 WP_252878912.1 4987049..4987921(+) (pilD) [Pseudomonas siliginis strain OTU6MEDAA1]
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAACGTAGTGGTCTGGCGCCTGCCGAAGATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCCACTGAAACGCCTGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGTGGCTGCGCGGGCGATGCTCAGGCTGCTCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTCCTCTCGGCATTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTCTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGTATCGGCCATGGCGATT
TCAAGCTGTTGGCCTTGCTCGGCGCATGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCTTCCCTGGTGGGG
GCGATTTTGGGCGTTGTCATGCTGCGTCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAACGTAGTGGTCTGGCGCCTGCCGAAGATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCCACTGAAACGCCTGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGTGGCTGCGCGGGCGATGCTCAGGCTGCTCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTCCTCTCGGCATTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTCTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGTATCGGCCATGGCGATT
TCAAGCTGTTGGCCTTGCTCGGCGCATGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCTTCCCTGGTGGGG
GCGATTTTGGGCGTTGTCATGCTGCGTCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCGAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.873 |
97.931 |
0.528 |
| pilD | Vibrio campbellii strain DS40M4 |
52.632 |
98.276 |
0.517 |
| pilD | Neisseria gonorrhoeae MS11 |
46.341 |
98.966 |
0.459 |
| pilD | Acinetobacter baumannii D1279779 |
46.715 |
94.483 |
0.441 |
| pilD | Acinetobacter nosocomialis M2 |
46.715 |
94.483 |
0.441 |