Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NF676_RS23135 Genome accession   NZ_CP099598
Coordinates   5039904..5041250 (+) Length   448 a.a.
NCBI ID   WP_252886817.1    Uniprot ID   -
Organism   Pseudomonas siliginis strain OTU6BANIB1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5034904..5046250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF676_RS23110 (NF676_23115) pgeF 5035118..5035840 (-) 723 WP_056790460.1 peptidoglycan editing factor PgeF -
  NF676_RS23115 (NF676_23120) rluD 5035837..5036799 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NF676_RS23120 (NF676_23125) - 5036951..5037967 (+) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  NF676_RS23125 (NF676_23130) - 5038095..5038328 (+) 234 WP_252868302.1 PP0621 family protein -
  NF676_RS23130 (NF676_23135) pilS 5038318..5039907 (+) 1590 WP_073475487.1 ATP-binding protein Regulator
  NF676_RS23135 (NF676_23140) pilR 5039904..5041250 (+) 1347 WP_252886817.1 sigma-54 dependent transcriptional regulator Regulator
  NF676_RS23140 (NF676_23145) thiO 5041343..5042443 (-) 1101 WP_252886818.1 glycine oxidase ThiO -
  NF676_RS23145 (NF676_23150) - 5042501..5042902 (-) 402 WP_252868305.1 type IV pilin protein -
  NF676_RS23150 (NF676_23155) - 5042918..5046007 (-) 3090 WP_252886819.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50207.50 Da        Isoelectric Point: 6.3600

>NTDB_id=700908 NF676_RS23135 WP_252886817.1 5039904..5041250(+) (pilR) [Pseudomonas siliginis strain OTU6BANIB1]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSQPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=700908 NF676_RS23135 WP_252886817.1 5039904..5041250(+) (pilR) [Pseudomonas siliginis strain OTU6BANIB1]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAGGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGATCCACACCTGCCG
GTGGCGATGATCACTGCGTACGGAAGCCTGGAAACGGCCATCAATGCATTGAAGGCCGGGGCGTTCGATTTCCTCACCAA
ACCGGTGGAGCTGCCGCGATTGCGCGAACTGGTCAGCTCGGCACTGCGCCTGCCGACAGCGGGCGGCCTGAGCACGGCAA
TCGAGCGACGCTTGCTGGGCGATTCGCAGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCGCGCAGCCAGGCG
CCGGTATACATCAGCGGCGAATCCGGCAGCGGCAAAGAACTGGTCGCGCGTCTGATTCACGAACAAGGCCCGCGCGCCAG
CCAGCCGTTTGTGCCGGTGAACTGCGGGGCAATTCCGTCGGAACTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GCTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTATTCCAGGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GACCTGCCACTGTCGATGCAAGTGAAGCTGCTGCGGGCGATTCAGGAAAAAGCCGTACGCAGCGTCGGCGGCCAGCAGGA
AACAGTGGTCGACGTACGCATCCTTTGCGCCACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGCGTGCCTTCCCTGCGCGAACGCCGCGACGACATCGAGGCGCTTGCC
ATGCACGTACTCAAGCGCTTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCACCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAACGTGCGCGAACTGGAGAATGTTCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGATGGGGCGATGGCCGATCTGACACAGATCGACAAT
CTCGAGGATTATCTGGAGAGCGTCGAGAGGAAACTGATTCTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCAGC
GGCGCAGCGGTTGAGTCTGTCGTTCAGGTCGATGCGCTATCGGCTGAAGAAATTGGGACTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

98.884

0.772
  pilR Acinetobacter baumannii strain A118

49.237

100

0.504
  luxO Vibrio cholerae strain A1552

40.098

91.295

0.366