Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NF676_RS23130 Genome accession   NZ_CP099598
Coordinates   5038318..5039907 (+) Length   529 a.a.
NCBI ID   WP_073475487.1    Uniprot ID   A0A5E7NZH7
Organism   Pseudomonas siliginis strain OTU6BANIB1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5033318..5044907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF676_RS23110 (NF676_23115) pgeF 5035118..5035840 (-) 723 WP_056790460.1 peptidoglycan editing factor PgeF -
  NF676_RS23115 (NF676_23120) rluD 5035837..5036799 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NF676_RS23120 (NF676_23125) - 5036951..5037967 (+) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  NF676_RS23125 (NF676_23130) - 5038095..5038328 (+) 234 WP_252868302.1 PP0621 family protein -
  NF676_RS23130 (NF676_23135) pilS 5038318..5039907 (+) 1590 WP_073475487.1 ATP-binding protein Regulator
  NF676_RS23135 (NF676_23140) pilR 5039904..5041250 (+) 1347 WP_252886817.1 sigma-54 dependent transcriptional regulator Regulator
  NF676_RS23140 (NF676_23145) thiO 5041343..5042443 (-) 1101 WP_252886818.1 glycine oxidase ThiO -
  NF676_RS23145 (NF676_23150) - 5042501..5042902 (-) 402 WP_252868305.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58635.32 Da        Isoelectric Point: 6.9012

>NTDB_id=700907 NF676_RS23130 WP_073475487.1 5038318..5039907(+) (pilS) [Pseudomonas siliginis strain OTU6BANIB1]
MVAEAVNADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEHRRVQLANHSAQSLLGHSHLQGHLID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGETREQANER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQAEVWLALFVDPDSQLAVLEVQDNGPGVSADEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=700907 NF676_RS23130 WP_073475487.1 5038318..5039907(+) (pilS) [Pseudomonas siliginis strain OTU6BANIB1]
GTGGTCGCTGAGGCCGTCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTGTACCGTTTAAGTGT
CGGCATCACTCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GCGGCAGCTGGCTGTACCTGATCATCAATATGCTGCTGGTGGTGTTCCTCGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCGCTTGTCGATGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCCGGCGGCGTGGCCAGTGCGCTGGGCAATCT
GCTGGTGGTCTCGGTGGCGATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATTGCCGCCATCGCGGCGATCG
GCATTGTCGGCCTGAGTTTTCTGCTGGGGCTCAGCCGCCCCTTGAGCGCCAACGCGTACCTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTCGCCGCCTCACTGCTGGTGCAAGGGCTGATCCGCCGCCTCGAAGTCAGCGAGACCCTGGCCGAACAGCG
CGCCAGCGAAGTGGTCAGCCTGGAGGCGCTGAACGCGTTGATCCTGCAACGCATGCGCACGGGGATTCTGGTGCTCGACG
AGCACCGCCGGGTACAACTGGCCAATCACAGTGCGCAGAGTCTGCTCGGCCATAGTCACCTGCAAGGTCATTTGATCGAC
GAATATTCGCCAGCACTCGTCGAGCGCCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGTCTGAAAATCCC
CGGCAATGGCCTTGAGCTGCAACCCAGCTTCATCGCTCTCGAGCAGAGTCCGAACCAGCAGACGCTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAAGCCCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCACTGGGCGCGATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGACG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGATTTCGTCGGCGAGACCCGCGAGCAGGCCAATGAGCGC
CAGCACATTCATCTGCGAATCAATTCCGGCGATTTCACCACGCTGATGGACCCCAACCAGCTGCGGCAGATTCTCGACAA
TCTGATCCGCAACGCCTGGCGTCACAGTGCCCAACTGCACGAGCAGGCCGAAGTATGGCTGGCACTGTTCGTCGACCCCG
ACAGCCAATTGGCAGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGATGAACAGGCGCACCTGTTTGAGCCA
TTCTTCACTACGAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E7NZH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.623

100

0.597