Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NF675_RS22250 Genome accession   NZ_CP099596
Coordinates   5070092..5071438 (+) Length   448 a.a.
NCBI ID   WP_252878915.1    Uniprot ID   -
Organism   Pseudomonas siliginis strain OTU6BAGNBB1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5065092..5076438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF675_RS22225 (NF675_22225) pgeF 5065306..5066028 (-) 723 WP_150638502.1 peptidoglycan editing factor PgeF -
  NF675_RS22230 (NF675_22230) rluD 5066025..5066987 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NF675_RS22235 (NF675_22235) - 5067139..5068155 (+) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  NF675_RS22240 (NF675_22240) - 5068283..5068516 (+) 234 WP_016773138.1 PP0621 family protein -
  NF675_RS22245 (NF675_22245) pilS 5068506..5070095 (+) 1590 WP_252878914.1 ATP-binding protein Regulator
  NF675_RS22250 (NF675_22250) pilR 5070092..5071438 (+) 1347 WP_252878915.1 sigma-54 dependent transcriptional regulator Regulator
  NF675_RS22255 (NF675_22255) thiO 5071531..5072631 (-) 1101 WP_252878916.1 glycine oxidase ThiO -
  NF675_RS22260 (NF675_22260) - 5072689..5073090 (-) 402 WP_252868305.1 type IV pilin protein -
  NF675_RS22265 (NF675_22265) - 5073106..5076195 (-) 3090 WP_252878917.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50193.47 Da        Isoelectric Point: 6.3600

>NTDB_id=700879 NF675_RS22250 WP_252878915.1 5070092..5071438(+) (pilR) [Pseudomonas siliginis strain OTU6BAGNBB1]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSQPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQVDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=700879 NF675_RS22250 WP_252878915.1 5070092..5071438(+) (pilR) [Pseudomonas siliginis strain OTU6BAGNBB1]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAGGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGATCCACACCTGCCG
GTGGCGATGATCACTGCGTACGGAAGCCTGGAAACGGCCATCAATGCATTGAAGGCCGGGGCGTTCGATTTCCTCACCAA
ACCGGTGGAGCTGCCGCGATTGCGCGAACTGGTCAGCTCGGCGCTGCGCCTGCCGACAGCGGGCGGCCTGAGCACGGCAA
TCGAGCGACGGTTGCTGGGCGACTCGCAGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCACGCAGTCAGGCG
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCGCGTCTGATTCACGAACAAGGCCCGCGCGCCAG
CCAGCCGTTTGTGCCGGTGAACTGCGGGGCAATTCCGTCGGAACTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GCTTCACCGGTGCCGTCGAAGACAAGCCGGGGCTATTCCAGGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GACCTGCCGCTGTCGATGCAGGTAAAACTGCTGCGAGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTGCGTATCCTTTGCGCCACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGCGTGCCCTCCCTGCGCGAGCGCCGTGACGACATCGAGGCGCTTGCC
ATGCACGTACTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCACCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAACGTGCGCGAACTGGAGAACGTTCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGACGGGGCGATGGCCGATCTGACGCAGGTCGACAAT
CTTGAGGATTATCTGGAGAGCGTCGAGAGGAAGCTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTCAGGTCGATGCGTTATCGGCTGAAGAAATTGGGACTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.878

98.884

0.77
  pilR Acinetobacter baumannii strain A118

49.455

100

0.507
  luxO Vibrio cholerae strain A1552

40.342

91.295

0.368