Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NF675_RS22245 Genome accession   NZ_CP099596
Coordinates   5068506..5070095 (+) Length   529 a.a.
NCBI ID   WP_252878914.1    Uniprot ID   -
Organism   Pseudomonas siliginis strain OTU6BAGNBB1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5063506..5075095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF675_RS22225 (NF675_22225) pgeF 5065306..5066028 (-) 723 WP_150638502.1 peptidoglycan editing factor PgeF -
  NF675_RS22230 (NF675_22230) rluD 5066025..5066987 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NF675_RS22235 (NF675_22235) - 5067139..5068155 (+) 1017 WP_056790462.1 outer membrane protein assembly factor BamD -
  NF675_RS22240 (NF675_22240) - 5068283..5068516 (+) 234 WP_016773138.1 PP0621 family protein -
  NF675_RS22245 (NF675_22245) pilS 5068506..5070095 (+) 1590 WP_252878914.1 ATP-binding protein Regulator
  NF675_RS22250 (NF675_22250) pilR 5070092..5071438 (+) 1347 WP_252878915.1 sigma-54 dependent transcriptional regulator Regulator
  NF675_RS22255 (NF675_22255) thiO 5071531..5072631 (-) 1101 WP_252878916.1 glycine oxidase ThiO -
  NF675_RS22260 (NF675_22260) - 5072689..5073090 (-) 402 WP_252868305.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58652.35 Da        Isoelectric Point: 7.0024

>NTDB_id=700878 NF675_RS22245 WP_252878914.1 5068506..5070095(+) (pilS) [Pseudomonas siliginis strain OTU6BAGNBB1]
MVAEAVNADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSENLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHLID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGETREQANER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQADVWLALFVDPDSQLAVLEVQDNGPGVSADEQAHLFEP
FFTKSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=700878 NF675_RS22245 WP_252878914.1 5068506..5070095(+) (pilS) [Pseudomonas siliginis strain OTU6BAGNBB1]
GTGGTCGCTGAGGCCGTCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTGTACCGTTTAAGTGT
CGGCATCACTCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GTGGCAGCTGGCTGTACCTGATCATCAATATGCTGCTGGTGGTGTTCCTTGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCGCTTGTCGATGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCCGGCGGCGTGGCCAGTGCGCTGGGCAATTT
GCTGGTGGTCTCGGTGGCGATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATTGCCGCCATTGCGGCGATCG
GCATTGTCGGCCTGAGTTTTCTGCTGGGGCTCAGCCGCCCCTTGAGCGCCAACGCGTACCTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTCGCCGCCTCACTGCTGGTGCAAGGGCTGATTCGTCGCCTCGAAGTCAGCGAGAACCTGGCCGAACAACG
CGCCAGCGAAGTGGTCAGCCTAGAGGCGCTGAACGCGTTGATCCTACAACGCATGCGCACGGGGATTCTGGTGCTCGACG
AACAACGCCGGGTGCAACTGGCCAATCACAGTGCGCAGAGTCTGCTCGGCCATAGTCACCTGCAAGGTCATTTGATCGAC
GAATATTCGCCAGCACTCGTCGAGCGCCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAATGGCCTTGAGCTGCAACCCAGCTTCATCGCTCTCGAGCAGAGTCCGAACCAGCAGACACTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAAGCCCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCACTGGGCGCGATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGACG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAACCCGCGAGCAGGCCAACGAACGC
CAGCACATTCATCTGCGAATCAATTCCGGCGATTTCACCACGCTGATGGACCCCAACCAGCTGCGGCAGATTCTCGACAA
TCTGATCCGCAACGCCTGGCGTCACAGTGCCCAACTGCACGAGCAGGCCGACGTCTGGCTGGCACTGTTCGTCGACCCCG
ACAGCCAATTGGCAGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGATGAACAGGCGCATCTGTTTGAGCCG
TTCTTCACTAAGAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.245

100

0.594