Detailed information NTG0700751

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NG836_RS07065
• Genome accession: NZ_CP099575
• Coordinates: 1586412..1587278 (-)
• Length: 288 a.a.
• NCBI ID: WP_252826629.1
• Uniprot ID: -
• Organism: Pseudomonas kermanshahensis strain F8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1581412..1592278

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NG836_RS07030 (NG836_07030)	-	1581834..1583129 (-)	1296	WP_252826625.1	NAD(P)/FAD-dependent oxidoreductase	-
NG836_RS07035 (NG836_07035)	-	1583214..1583387 (-)	174	WP_013970765.1	DUF3094 family protein	-
NG836_RS07040 (NG836_07040)	-	1583520..1584149 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
NG836_RS07045 (NG836_07045)	-	1584205..1584636 (-)	432	WP_252826626.1	hypothetical protein	-
NG836_RS07050 (NG836_07050)	-	1584747..1585427 (+)	681	WP_252826627.1	energy-coupling factor ABC transporter permease	-
NG836_RS07055 (NG836_07055)	yacG	1585592..1585792 (-)	201	WP_252826628.1	DNA gyrase inhibitor YacG	-
NG836_RS07060 (NG836_07060)	coaE	1585789..1586412 (-)	624	WP_027594559.1	dephospho-CoA kinase	-
NG836_RS07065 (NG836_07065)	pilD	1586412..1587278 (-)	867	WP_252826629.1	prepilin peptidase	Machinery gene
NG836_RS07070 (NG836_07070)	-	1587281..1588489 (-)	1209	WP_252826630.1	type II secretion system F family protein	-
NG836_RS07075 (NG836_07075)	-	1588707..1589117 (+)	411	WP_252826631.1	pilin	-
NG836_RS07085 (NG836_07085)	-	1589443..1589688 (+)	246	WP_252826632.1	hypothetical protein	-
NG836_RS07090 (NG836_07090)	-	1590222..1590449 (+)	228	WP_186703597.1	hypothetical protein	-
NG836_RS07095 (NG836_07095)	-	1590592..1591521 (+)	930	WP_252826633.1	malate dehydrogenase	-
NG836_RS07100 (NG836_07100)	-	1591685..1592167 (+)	483	WP_027594541.1	ImmA/IrrE family metallo-endopeptidase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31780.02 Da
• Isoelectric Point: 7.8370

>NTDB_id=700751 NG836_RS07065 WP_252826629.1 1586412..1587278(-) (pilD) [Pseudomonas kermanshahensis strain F8]
MTLWTFLAMQPAYFITLATVLGLLVGSFINVVVYRLPIMLDRQWQREAQEVLGLPVAEHARFDLCLPASQCTQCGHRIRA
WENVPILSYLALRGRCSACKQRISVRYPLVELSCALLSMAVAWRCGASVEALALLPLTWGLLALSLIDHDQQLLPDAIVL
PGLWLGLIVNYFGVLVPLPDAVCGAVVGYLTLWTVYWLFKLVTGKEGMGYGDFKLLALIGAWGGWQVLPLTLLLSSVVGA
LVGVFLLRMRKHSIGMAMPFGPYLAIAGWIAVLWGDEIYASYLQLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=700751 NG836_RS07065 WP_252826629.1 1586412..1587278(-) (pilD) [Pseudomonas kermanshahensis strain F8]
ATGACTTTATGGACCTTCCTGGCGATGCAGCCGGCTTACTTCATCACCTTGGCGACCGTGCTGGGGTTGTTGGTGGGCAG
TTTTATCAATGTGGTGGTGTACCGCTTGCCGATCATGCTGGACCGCCAATGGCAGCGTGAGGCACAGGAGGTGCTGGGGT
TGCCGGTGGCCGAGCATGCGCGTTTCGACCTGTGCCTGCCGGCCTCGCAGTGCACCCAGTGTGGGCATCGGATTCGGGCG
TGGGAAAACGTCCCCATCCTCAGTTACCTGGCGTTGCGTGGGCGTTGCTCTGCCTGCAAGCAGCGCATCAGCGTGCGTTA
TCCGTTGGTGGAGCTGAGCTGTGCGCTGCTGTCGATGGCGGTGGCCTGGCGCTGCGGGGCCAGTGTCGAGGCACTGGCGC
TTTTGCCGCTGACGTGGGGTTTGCTGGCCCTGAGCTTGATCGACCATGACCAACAATTGCTGCCTGACGCCATCGTGCTG
CCGGGGCTGTGGCTTGGGTTGATCGTCAATTACTTCGGCGTATTGGTGCCCTTGCCCGATGCGGTGTGCGGCGCCGTGGT
CGGGTACCTCACCCTGTGGACGGTGTACTGGCTGTTCAAACTGGTGACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGCTGGCACTGATCGGTGCCTGGGGTGGTTGGCAGGTGCTGCCGCTGACCTTGCTGCTGTCGTCGGTGGTAGGGGCG
TTGGTGGGCGTGTTCCTGCTGCGGATGCGCAAGCATTCCATCGGCATGGCCATGCCGTTTGGCCCCTATCTGGCAATTGC
GGGGTGGATTGCTGTGCTCTGGGGTGATGAAATATACGCCTCTTACCTGCAACTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.43	96.181	0.514
pilD	Vibrio campbellii strain DS40M4	50	95.833	0.479
pilD	Acinetobacter baumannii D1279779	48.754	97.569	0.476
pilD	Acinetobacter nosocomialis M2	48.399	97.569	0.472
pilD	Neisseria gonorrhoeae MS11	48	95.486	0.458