Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NHB35_RS09920 Genome accession   NZ_CP099572
Coordinates   1913463..1913915 (-) Length   150 a.a.
NCBI ID   WP_353432195.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-UH23A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1908463..1918915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHB35_RS09905 (NHB35_09895) ilvA 1910118..1911638 (+) 1521 WP_353432192.1 threonine ammonia-lyase, biosynthetic -
  NHB35_RS09910 (NHB35_09900) - 1911641..1912555 (+) 915 WP_353432193.1 5'-nucleotidase -
  NHB35_RS09915 (NHB35_09905) queF 1912558..1913385 (+) 828 WP_353432194.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  NHB35_RS09920 (NHB35_09910) ssb 1913463..1913915 (-) 453 WP_353432195.1 single-stranded DNA-binding protein Machinery gene
  NHB35_RS09925 (NHB35_09915) - 1914008..1915174 (-) 1167 WP_353432196.1 MFS transporter -
  NHB35_RS09930 (NHB35_09920) uvrA 1915212..1918112 (+) 2901 WP_353432197.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16193.04 Da        Isoelectric Point: 5.9393

>NTDB_id=700738 NHB35_RS09920 WP_353432195.1 1913463..1913915(-) (ssb) [Polynucleobacter sp. MWH-UH23A]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGGDSGESYSRSKSAEQPASAASNAASLGAMDDDIPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=700738 NHB35_RS09920 WP_353432195.1 1913463..1913915(-) (ssb) [Polynucleobacter sp. MWH-UH23A]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTAGGGCGCGATCCAGAAACGCGTTATATGCCAAGTGGCGACGC
AGTTACTAATATTTCAGTAGCAACTTCAGATCGCTACAAAGATAAGCAAACAGGTGAAATGAAAGAAACCACGGAATGGC
ATCGCGTTGCATTCTTTGGAAAGCTTGCAGAGATTGCAGGGCAGTATCTTAAAAAAGGTTCACAGGTTTACGTGGAAGGT
CGTTTACGTACGCGTAAATGGACAGATGCAAGTGGTCAAGAAAAATACTCCACCGAAATCGTTGCTGAAACTATGCAAAT
GCTTGGTGGTAAGCCAGTTGGTGGTGGCGATAGCGGTGAGAGCTATAGCCGTTCTAAGTCTGCTGAGCAGCCAGCTTCAG
CCGCCTCTAATGCCGCATCATTAGGCGCGATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.412

100

0.607
  ssb Glaesserella parasuis strain SC1401

46.154

100

0.56
  ssb Neisseria meningitidis MC58

46.552

100

0.54
  ssb Neisseria gonorrhoeae MS11

45.977

100

0.533