Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NHB34_RS09140 Genome accession   NZ_CP099571
Coordinates   1800164..1800616 (-) Length   150 a.a.
NCBI ID   WP_353427328.1    Uniprot ID   -
Organism   Polynucleobacter sp. MWH-UH19D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1795164..1805616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHB34_RS09125 (NHB34_09120) ilvA 1796817..1798337 (+) 1521 WP_353427325.1 threonine ammonia-lyase, biosynthetic -
  NHB34_RS09130 (NHB34_09125) - 1798340..1799254 (+) 915 WP_353427326.1 5'-nucleotidase -
  NHB34_RS09135 (NHB34_09130) queF 1799257..1800084 (+) 828 WP_353427327.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  NHB34_RS09140 (NHB34_09135) ssb 1800164..1800616 (-) 453 WP_353427328.1 single-stranded DNA-binding protein Machinery gene
  NHB34_RS09145 (NHB34_09140) - 1800707..1801873 (-) 1167 WP_353427329.1 MFS transporter -
  NHB34_RS09150 (NHB34_09145) uvrA 1801911..1804805 (+) 2895 WP_353427330.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16233.10 Da        Isoelectric Point: 5.9393

>NTDB_id=700728 NHB34_RS09140 WP_353427328.1 1800164..1800616(-) (ssb) [Polynucleobacter sp. MWH-UH19D]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVAETMQMLGGKPVGGGDSGESYSRSKSTEQPAPAASNAASLGAMDDDIPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=700728 NHB34_RS09140 WP_353427328.1 1800164..1800616(-) (ssb) [Polynucleobacter sp. MWH-UH19D]
ATGGCTTCGGTAAATAAGGTCATCATCGTAGGTAACGTTGGGCGCGATCCAGAAACGCGTTATATGCCAAGCGGCGACGC
AGTTACCAATATTTCAGTAGCAACCTCAGACCGCTACAAAGATAAGCAAACAGGCGAAATGAAAGAAACCACAGAATGGC
ATCGTGTTGCCTTCTTTGGCAAGCTTGCAGAGATTGCGGGTCAGTACCTTAAAAAAGGTTCTCAGGTTTATGTAGAGGGT
CGTTTACGTACACGTAAATGGACCGATGCGAGTGGTCAAGAAAAATATTCCACAGAAATCGTTGCCGAAACGATGCAAAT
GCTTGGTGGCAAGCCAGTTGGTGGTGGCGATAGTGGCGAGAGCTATAGTCGTTCTAAGTCTACTGAGCAGCCAGCTCCAG
CGGCTTCTAATGCTGCCTCATTAGGCGCGATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.6
  ssb Glaesserella parasuis strain SC1401

47.222

100

0.567
  ssb Neisseria meningitidis MC58

47.126

100

0.547
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.54