Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ALSL_RS11495 Genome accession   NZ_AP018560
Coordinates   2461012..2461509 (-) Length   165 a.a.
NCBI ID   WP_126539301.1    Uniprot ID   A0A2Z6E6Y8
Organism   Aerosticca soli strain Dysh456     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2456012..2466509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALSL_RS11480 (ALSL_2308) - 2456982..2458547 (-) 1566 WP_174928848.1 response regulator -
  ALSL_RS11485 (ALSL_2309) - 2458587..2459033 (-) 447 WP_126539299.1 response regulator -
  ALSL_RS11490 (ALSL_2310) - 2459030..2460907 (-) 1878 WP_231700223.1 ATP-binding protein -
  ALSL_RS11495 (ALSL_2311) ssb 2461012..2461509 (-) 498 WP_126539301.1 single-stranded DNA-binding protein Machinery gene
  ALSL_RS11500 (ALSL_2312) - 2461639..2462838 (-) 1200 WP_126540250.1 MFS transporter -
  ALSL_RS11505 (ALSL_2313) - 2463104..2464099 (+) 996 WP_126539303.1 polyprenyl synthetase family protein -
  ALSL_RS11510 (ALSL_2314) - 2464110..2464898 (-) 789 WP_126539305.1 dienelactone hydrolase family protein -
  ALSL_RS11515 (ALSL_2315) - 2465013..2466221 (-) 1209 WP_126539307.1 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17746.67 Da        Isoelectric Point: 5.3755

>NTDB_id=70069 ALSL_RS11495 WP_126539301.1 2461012..2461509(-) (ssb) [Aerosticca soli strain Dysh456]
MARGVNKVILIGNLGADPEVRYTGSGTAITSLRIATSEQWTDKQSGERQERTEWHRVKLFGKLAEIAGEYLKKGRQVYIE
GSLRTDKYTDKDGIERYSTDIVASDMQMLGGMGGEGGGQGGQGGFRERAPAGPRGPAARGGEERAPRPSAPAPESTGFDD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=70069 ALSL_RS11495 WP_126539301.1 2461012..2461509(-) (ssb) [Aerosticca soli strain Dysh456]
ATGGCCCGTGGCGTCAACAAGGTCATCCTGATCGGCAATCTCGGCGCCGATCCCGAAGTCCGCTACACCGGCAGCGGCAC
CGCGATCACCAGTCTGCGTATCGCCACTTCCGAGCAGTGGACCGACAAGCAGAGCGGCGAGCGCCAGGAACGCACCGAAT
GGCATCGCGTGAAACTGTTCGGCAAGCTCGCCGAGATTGCCGGCGAATACCTGAAGAAGGGCCGGCAGGTGTACATCGAA
GGCTCGCTGCGCACCGACAAGTACACCGACAAGGACGGCATCGAGCGTTATTCCACCGACATCGTCGCCAGCGACATGCA
GATGCTGGGCGGCATGGGTGGCGAGGGTGGTGGCCAGGGCGGCCAGGGTGGCTTTCGCGAGCGCGCGCCCGCCGGTCCGC
GCGGGCCGGCGGCACGCGGCGGCGAGGAGCGCGCTCCGCGCCCGTCGGCCCCGGCGCCTGAGAGCACCGGCTTCGACGAC
GACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z6E6Y8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.977

100

0.576
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.509
  ssb Neisseria meningitidis MC58

47.727

100

0.509
  ssb Glaesserella parasuis strain SC1401

43.575

100

0.473

Multiple sequence alignment