Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NGM19_RS15035 Genome accession   NZ_CP099548
Coordinates   3148647..3149231 (-) Length   194 a.a.
NCBI ID   WP_004909838.1    Uniprot ID   A0A8I0V5Q1
Organism   Acinetobacter junii strain AJ6079     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3143647..3154231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM19_RS15025 (NGM19_15025) - 3145716..3147272 (-) 1557 WP_252665723.1 site-specific integrase -
  NGM19_RS15030 (NGM19_15030) - 3147265..3148491 (-) 1227 WP_017402838.1 site-specific integrase -
  NGM19_RS15035 (NGM19_15035) ssb 3148647..3149231 (-) 585 WP_004909838.1 single-stranded DNA-binding protein Machinery gene
  NGM19_RS15040 (NGM19_15040) - 3149284..3150648 (-) 1365 WP_005403380.1 MFS transporter -
  NGM19_RS15045 (NGM19_15045) - 3150785..3151867 (-) 1083 WP_004909842.1 DUF475 domain-containing protein -
  NGM19_RS15050 (NGM19_15050) tenA 3152042..3152716 (+) 675 WP_039048000.1 thiaminase II -
  NGM19_RS15055 (NGM19_15055) - 3152890..3153918 (-) 1029 WP_080632252.1 transposase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21241.96 Da        Isoelectric Point: 6.7308

>NTDB_id=700625 NGM19_RS15035 WP_004909838.1 3148647..3149231(-) (ssb) [Acinetobacter junii strain AJ6079]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGGEHQAGNDFNQPRFNNNQGGGYQNTGYNNNQNGYGQGGGFGGGNQG
NYAGSPQAGNGFNTPKAAPQPAAAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=700625 NGM19_RS15035 WP_004909838.1 3148647..3149231(-) (ssb) [Acinetobacter junii strain AJ6079]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCTGAGACAAAAACCTTTCCAAATGGTGGATC
ACTGACCCAATTTTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGAAAAGAACAAACAGAATGGC
ATCGTATCGTATTGCATAACCGTCTAGGTGAAATTGCACAGCAATACTTACGTAAAGGTTCGAAAGTTTATATCGAAGGT
TCATTGCGTACGCGCCAATGGACAGACCAAAATGGTCAAGAGCGTTACAGCACCGAAATTCGTGGTGACCAAATGCAAAT
GCTCGATTCTCGTCAGCAAGGTGGTGAGCATCAAGCGGGTAATGATTTTAACCAACCGCGTTTTAACAACAATCAAGGCG
GTGGCTACCAAAACACAGGCTATAACAACAACCAAAATGGTTATGGTCAAGGTGGCGGTTTTGGTGGTGGAAATCAGGGC
AATTATGCAGGCAGTCCGCAAGCAGGTAATGGTTTTAATACACCAAAAGCCGCACCTCAACCTGCTGCTGCTCCAGCTGA
CTTAGATGATGATTTACCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.67

100

0.454
  ssb Neisseria gonorrhoeae MS11

39.583

98.969

0.392
  ssb Neisseria meningitidis MC58

39.583

98.969

0.392