Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   NGM67_RS14795 Genome accession   NZ_CP099545
Coordinates   2164192..2164782 (-) Length   196 a.a.
NCBI ID   WP_005298539.1    Uniprot ID   A0A2T3QKX1
Organism   Photobacterium damselae strain XP-11     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2159192..2169782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM67_RS14775 (NGM67_14775) - 2159531..2161480 (+) 1950 WP_005298544.1 ATP-binding protein -
  NGM67_RS14780 (NGM67_14780) - 2161477..2161977 (+) 501 WP_036763513.1 response regulator -
  NGM67_RS14785 (NGM67_14785) - 2162138..2163133 (+) 996 WP_005298543.1 2-hydroxyacid dehydrogenase -
  NGM67_RS14790 (NGM67_14790) dsdC 2163156..2164088 (-) 933 WP_068947083.1 DNA-binding transcriptional regulator DsdC -
  NGM67_RS14795 (NGM67_14795) tfoX 2164192..2164782 (-) 591 WP_005298539.1 TfoX/Sxy family DNA transformation protein Regulator
  NGM67_RS14800 (NGM67_14800) - 2165332..2166246 (+) 915 WP_005298537.1 HDOD domain-containing protein -
  NGM67_RS14805 (NGM67_14805) - 2166544..2167443 (+) 900 WP_252689837.1 lysine exporter LysO family protein -
  NGM67_RS14810 (NGM67_14810) - 2167551..2168003 (-) 453 WP_005298533.1 YidB family protein -
  NGM67_RS14815 (NGM67_14815) lysM 2168050..2168478 (-) 429 WP_252689838.1 peptidoglycan-binding protein LysM -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 22379.86 Da        Isoelectric Point: 9.5467

>NTDB_id=700564 NGM67_RS14795 WP_005298539.1 2164192..2164782(-) (tfoX) [Photobacterium damselae strain XP-11]
MRNIKDEFLNYLNDFGPFEKRSMFGGTGVFVDGAMYAIINNGRIFLRGGETLDDELIGLNCGRFKHVKRSTTAIVNYYDI
TTIYLDNEPKCRDLVNKSIQYACAERNIKFSEDSRRLRDLPNMRLTLERMVKKAGIPDVKSFMSLGAVEVYRKVRRSHGS
GVDVKLLWIFAGAVDGCHWTLLKDEQKSVLLKALNN

Nucleotide


Download         Length: 591 bp        

>NTDB_id=700564 NGM67_RS14795 WP_005298539.1 2164192..2164782(-) (tfoX) [Photobacterium damselae strain XP-11]
GTGAGAAATATCAAGGATGAATTTCTTAATTATTTGAATGACTTCGGTCCTTTTGAAAAACGTTCGATGTTCGGTGGAAC
CGGTGTTTTTGTTGATGGTGCTATGTATGCCATTATCAATAACGGTCGAATTTTTTTACGAGGTGGAGAAACGCTGGATG
ACGAATTGATCGGCTTAAACTGCGGAAGATTCAAGCATGTAAAACGTAGCACAACAGCCATTGTTAATTATTATGATATT
ACGACTATTTATCTTGATAATGAGCCTAAATGCCGTGATTTAGTCAATAAATCAATTCAATATGCTTGTGCAGAACGCAA
CATTAAGTTTTCTGAAGACAGTCGTCGCCTTCGTGATCTACCAAATATGCGTTTAACCTTAGAACGCATGGTGAAAAAAG
CTGGGATTCCAGATGTAAAGAGCTTTATGTCATTGGGGGCTGTTGAAGTATACCGTAAAGTTCGTCGCTCTCATGGTAGT
GGTGTTGATGTGAAATTGTTATGGATTTTTGCTGGTGCCGTCGATGGATGCCATTGGACATTACTAAAAGATGAGCAAAA
ATCAGTACTACTAAAAGCATTAAATAACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-193)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3QKX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

54.688

97.959

0.536
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

54.688

97.959

0.536
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

54.688

97.959

0.536
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

54.688

97.959

0.536
  tfoX Vibrio cholerae strain A1552

54.688

97.959

0.536
  tfoX Vibrio campbellii strain DS40M4

54.891

93.878

0.515
  tfoX Vibrio parahaemolyticus RIMD 2210633

54.348

93.878

0.51
  tfoX Aliivibrio fischeri ES114

48.454

98.98

0.48