Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PCP29_RS11495 Genome accession   NZ_CP115269
Coordinates   2435377..2436591 (+) Length   404 a.a.
NCBI ID   WP_043154328.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F020     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2430377..2441591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP29_RS11480 (PCP29_11480) - 2430970..2431563 (+) 594 WP_043154325.1 type II secretion system protein M -
  PCP29_RS11485 (PCP29_11485) gspD 2431560..2433971 (+) 2412 WP_023088536.1 type II secretion system secretin GspD -
  PCP29_RS11490 (PCP29_11490) pilB 2433968..2435377 (+) 1410 WP_003120811.1 type II secretion system ATPase GspE Machinery gene
  PCP29_RS11495 (PCP29_11495) pilC 2435377..2436591 (+) 1215 WP_043154328.1 type II secretion system inner membrane protein GspF Machinery gene
  PCP29_RS11500 (PCP29_11500) lapA 2437105..2438211 (+) 1107 WP_003112123.1 alkaline phosphatase LapA -
  PCP29_RS11505 (PCP29_11505) - 2438297..2439409 (+) 1113 WP_003112720.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43377.42 Da        Isoelectric Point: 9.3769

>NTDB_id=700564 PCP29_RS11495 WP_043154328.1 2435377..2436591(+) (pilC) [Pseudomonas aeruginosa strain F020]
MQTFRYEAADAQGRIETGTLEADSQRGALGQLRARGLTPLEVREQAGGGAGQGAGALFVPRLSDGDLAWATRQLASLLAA
SLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALAARPRDFPEIYRALVAAGEESGDLAQVMERLADYIEERN
ALRGKILTAFIYPAVVGVVSIGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQASDFVRAWGWLCAGAIGGAYWGWRL
YLRDPQARLGWHRRVLRLPLLGRFVLGVNTARFASTLAILGSAGVPLLRALDAARQTLANDCLAQAVEEATAQVREGVSL
ASALRTRQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVLTIVMAVLMPIIEMN
QLVQ

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=700564 PCP29_RS11495 WP_043154328.1 2435377..2436591(+) (pilC) [Pseudomonas aeruginosa strain F020]
ATGCAGACCTTCCGCTACGAAGCCGCCGACGCCCAGGGCCGGATCGAGACCGGCACCCTGGAGGCGGACAGCCAGCGTGG
CGCCCTCGGCCAACTGCGCGCCCGCGGCCTGACTCCGCTGGAGGTCCGCGAGCAGGCCGGCGGCGGGGCCGGGCAAGGGG
CGGGCGCGCTGTTCGTCCCGCGCCTGTCCGACGGCGACCTGGCCTGGGCCACCCGCCAGCTGGCCAGCCTGCTGGCCGCC
AGCCTGCCGCTGGAGGCGGCGCTGAGCGCCACCCTCGACCAGGCCGAGCGCAAGCACATCGCCCAGACCCTGAGCGCCGT
GCGCAGCGACGTGCGCGGCGGCATGCGCCTGGCCGACGCCCTTGCCGCACGGCCGCGGGACTTCCCGGAAATCTACCGGG
CGCTGGTGGCGGCGGGCGAGGAGTCCGGCGACCTGGCCCAGGTGATGGAGCGCCTGGCCGACTACATCGAGGAACGCAAC
GCCCTGCGCGGCAAGATCCTCACCGCGTTCATCTACCCGGCGGTGGTCGGCGTGGTCTCCATCGGCATCGTCATCTTCCT
CCTCGGCTACGTGGTGCCGCAGGTGGTCAGCGCCTTCTCCCAGGCGCGCCAGGATCTGCCGGCGCTGACCCGGGCGATGC
TCCAGGCCAGCGACTTCGTGCGCGCCTGGGGCTGGCTCTGCGCCGGCGCCATCGGTGGCGCTTACTGGGGCTGGCGCTTG
TACCTGCGCGACCCGCAGGCGCGGCTCGGCTGGCACCGGCGAGTGCTGCGCCTGCCTCTGCTCGGACGCTTCGTGCTCGG
GGTGAATACCGCGCGCTTCGCCTCCACCCTGGCGATCCTCGGCAGCGCCGGCGTACCGCTGCTGCGCGCGCTCGATGCGG
CGCGCCAGACGCTGGCCAACGACTGCCTCGCGCAGGCGGTGGAGGAGGCCACCGCGCAGGTTCGCGAAGGTGTCTCGCTG
GCCTCGGCGCTGCGCACGCGGCAGGTATTCCCGCCGATCCTCACCCACCTGATCGCCAGCGGCGAGAAGACCGGCGCGCT
GCCGCCGATGCTCGACCGCGCGGCGCAGACCCTGTCGCGCGACATCGAGCGCCGCGCCATGGGCATGACCGCGCTGCTCG
AGCCGCTGATGATCGTGGTCATGGGCGGGGTGGTGCTGACCATCGTGATGGCGGTGCTGATGCCGATCATCGAGATGAAC
CAGCTGGTCCAGTAG

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)

Type II secretion system (T2SS), protein F (T2SSF)

(71-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

36.386

100

0.364