Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NG830_RS05690 Genome accession   NZ_CP099542
Coordinates   1188168..1188713 (+) Length   181 a.a.
NCBI ID   WP_013024173.1    Uniprot ID   A0A8A4K787
Organism   Pantoea ananatis strain JT8-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1183168..1193713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG830_RS05675 (NG830_05670) - 1183179..1183502 (+) 324 WP_014606938.1 MmcQ/YjbR family DNA-binding protein -
  NG830_RS05680 (NG830_05675) - 1183541..1184605 (-) 1065 WP_028722999.1 NAD(P)-dependent alcohol dehydrogenase -
  NG830_RS05685 (NG830_05680) uvrA 1185118..1187946 (-) 2829 WP_047714330.1 excinuclease ABC subunit UvrA -
  NG830_RS05690 (NG830_05685) ssb 1188168..1188713 (+) 546 WP_013024173.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NG830_RS05695 (NG830_05690) - 1188808..1189380 (-) 573 WP_236708988.1 DUF1349 domain-containing protein -
  NG830_RS05700 (NG830_05695) - 1189477..1189995 (-) 519 WP_064366252.1 isochorismatase family protein -
  NG830_RS05705 (NG830_05700) - 1190110..1190952 (+) 843 WP_064366253.1 AraC family transcriptional regulator -
  NG830_RS05710 (NG830_05705) - 1192173..1192568 (-) 396 WP_014606933.1 transposase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19611.52 Da        Isoelectric Point: 5.2456

>NTDB_id=700534 NG830_RS05690 WP_013024173.1 1188168..1188713(+) (ssb) [Pantoea ananatis strain JT8-6]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAPAAGGGQGNNNGWGQPQQPQQANNNQFSGGAQSRPQQQ
PSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=700534 NG830_RS05690 WP_013024173.1 1188168..1188713(+) (ssb) [Pantoea ananatis strain JT8-6]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTACATGCCAAATGG
TGGCGCTGTCGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGATAAGCAGACCGGTGAAAACAAAGAAATCACTG
AATGGCACCGCGTAGTGCTGTTTGGCAAGCTGGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAAATGTTGGGTGGACGTCAGCAGGGCGGTAACGCGCCAGCAGCAGGCGGCGGCCAGGGCAATAACAACG
GTTGGGGCCAGCCTCAGCAACCGCAGCAGGCGAACAACAACCAGTTTAGCGGTGGCGCGCAGTCTCGCCCGCAGCAGCAG
CCAAGCGCACCTGCCAGCAACAACAATGAACCACCGATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.283

100

0.735
  ssb Glaesserella parasuis strain SC1401

57.812

100

0.613
  ssb Neisseria meningitidis MC58

46.154

100

0.464
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.464