Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NG826_RS16755 Genome accession   NZ_CP099535
Coordinates   3577119..3577664 (-) Length   181 a.a.
NCBI ID   WP_047714329.1    Uniprot ID   -
Organism   Pantoea ananatis strain JT1-188     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3572119..3582664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG826_RS16735 (NG826_16695) - 3573265..3573660 (+) 396 WP_014606933.1 transposase -
  NG826_RS16740 (NG826_16700) - 3574880..3575722 (-) 843 WP_028722997.1 AraC family transcriptional regulator -
  NG826_RS16745 (NG826_16705) - 3575837..3576355 (+) 519 WP_014606935.1 isochorismatase family protein -
  NG826_RS16750 (NG826_16710) - 3576452..3577024 (+) 573 WP_230624262.1 DUF1349 domain-containing protein -
  NG826_RS16755 (NG826_16715) ssb 3577119..3577664 (-) 546 WP_047714329.1 single-stranded DNA-binding protein SSB1 Machinery gene
  NG826_RS16760 (NG826_16720) uvrA 3577886..3580714 (+) 2829 WP_047714330.1 excinuclease ABC subunit UvrA -
  NG826_RS16765 (NG826_16725) - 3581229..3582293 (+) 1065 WP_028722999.1 NAD(P)-dependent alcohol dehydrogenase -
  NG826_RS16770 (NG826_16730) - 3582332..3582655 (-) 324 WP_047714331.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19641.54 Da        Isoelectric Point: 5.2456

>NTDB_id=700497 NG826_RS16755 WP_047714329.1 3577119..3577664(-) (ssb) [Pantoea ananatis strain JT1-188]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTSENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAPAAGGGQGNNNGWGQPQQPQQANNNQFSGGAQSRPQQQ
PSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=700497 NG826_RS16755 WP_047714329.1 3577119..3577664(-) (ssb) [Pantoea ananatis strain JT1-188]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTACATGCCAAATGG
TGGCGCTGTCGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGATAAGCAGACCAGTGAAAACAAAGAAATCACTG
AATGGCACCGCGTAGTGCTGTTTGGCAAGCTGGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAAATGTTGGGTGGACGTCAGCAGGGCGGTAACGCGCCAGCAGCAGGCGGCGGCCAGGGCAATAACAACG
GTTGGGGCCAGCCTCAGCAACCGCAGCAGGCGAACAACAACCAGTTTAGCGGTGGCGCGCAGTCTCGCCCGCAGCAGCAG
CCAAGCGCACCTGCCAGCAACAACAATGAACCACCGATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.739

100

0.729
  ssb Glaesserella parasuis strain SC1401

57.292

100

0.608
  ssb Neisseria meningitidis MC58

45.604

100

0.459
  ssb Neisseria gonorrhoeae MS11

45.604

100

0.459