Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NG824_RS07560 Genome accession   NZ_CP099534
Coordinates   1731916..1732443 (+) Length   175 a.a.
NCBI ID   WP_267093838.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain JR3-14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1726916..1737443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG824_RS07540 (NG824_07530) murD 1727704..1729140 (+) 1437 WP_267093834.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  NG824_RS07545 (NG824_07535) - 1729349..1730152 (+) 804 WP_267093835.1 dienelactone hydrolase family protein -
  NG824_RS07550 (NG824_07540) - 1730359..1730622 (-) 264 WP_267093836.1 helix-hairpin-helix domain-containing protein -
  NG824_RS07555 (NG824_07545) - 1730636..1731634 (-) 999 WP_267093837.1 polyprenyl synthetase family protein -
  NG824_RS07560 (NG824_07550) ssb 1731916..1732443 (+) 528 WP_267093838.1 single-stranded DNA-binding protein Machinery gene
  NG824_RS07565 (NG824_07555) - 1733297..1734193 (+) 897 WP_267093839.1 TIM barrel protein -
  NG824_RS07570 (NG824_07560) - 1734224..1735909 (+) 1686 WP_267093840.1 GMC family oxidoreductase -
  NG824_RS07575 (NG824_07565) - 1735909..1736481 (+) 573 WP_267093841.1 gluconate 2-dehydrogenase subunit 3 family protein -
  NG824_RS07580 (NG824_07570) - 1736525..1737268 (+) 744 WP_191091420.1 DUF1080 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18732.69 Da        Isoelectric Point: 5.3243

>NTDB_id=700471 NG824_RS07560 WP_267093838.1 1731916..1732443(+) (ssb) [Xanthomonas sacchari strain JR3-14]
MARGINKVILVGNLGNDPDIKYTQAGMAITRISLATTSVRKDRDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SIRYDKYTGQDGVEKYSTDIVADEMQMLGGRGEGGGGGMGGGDRPQRSAPPRQERSGMGGGGGGGGGQDYAPRRQQPAPQ
QSAPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=700471 NG824_RS07560 WP_267093838.1 1731916..1732443(+) (ssb) [Xanthomonas sacchari strain JR3-14]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACATCAAGTACACCCAGGCCGGCAT
GGCCATCACCCGCATCAGCCTGGCCACCACCAGCGTGCGCAAGGACCGCGACGGCAACCAGCAGGAACGCACCGAGTGGC
ATCGCGTGGTGTTTTTCGGAAAGCTCGGTGAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGACATCGTCGCCGACGAGATGCAGAT
GCTCGGCGGCCGCGGCGAGGGCGGTGGCGGCGGCATGGGCGGCGGCGACCGTCCGCAGCGCTCGGCGCCGCCGCGCCAGG
AACGCTCCGGCATGGGCGGTGGCGGCGGTGGTGGCGGCGGGCAGGATTACGCGCCGCGCCGGCAGCAGCCGGCCCCGCAG
CAGTCCGCGCCGATGGACGACTTCGCGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.211

100

0.48
  ssb Glaesserella parasuis strain SC1401

44.809

100

0.469
  ssb Neisseria meningitidis MC58

45.455

100

0.457
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.457